View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_high_35 (Length: 480)
Name: NF1126_high_35
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_35 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 29 - 480
Target Start/End: Original strand, 37304170 - 37304620
Alignment:
| Q |
29 |
actttggtcgtggagacaacaaaatctgcgttgattttaatctcatacnnnnnnngaacgccgaaaaatataggttttgatcccctacaatagcgttgct |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
37304170 |
actttggtcgtggagacaacaaaatctgcattgattttaatctcatactttttcc-aacgccgaaaaatataggtttcgatcccctacaatagtgttgtt |
37304268 |
T |
|
| Q |
129 |
gcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaaccagattggtctcgatatatgtg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37304269 |
gcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaaccagattggtctcgatatatgtg |
37304368 |
T |
|
| Q |
229 |
tctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatgttc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37304369 |
tctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatgttc |
37304468 |
T |
|
| Q |
329 |
atcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgcgaagtttc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37304469 |
atcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgcgaagtttc |
37304568 |
T |
|
| Q |
429 |
tcattttcagttctaagtgaagtattctcatgcctctcctgttgagtctgca |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37304569 |
tcattttcagttctaagtgaagtattctcatgcctctcctgttgagtctgca |
37304620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 16825536 - 16825423
Alignment:
| Q |
305 |
attttcaatcctcaagtgatgttcatcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaac |
404 |
Q |
| |
|
|||||||| |||||| |||||||||||||| |||||||| || ||||| ||||| ||||||||||||||||| |||||||| || |||||||||||| || |
|
|
| T |
16825536 |
attttcaagcctcaaatgatgttcatcaaatgacatttcacctatagctgttggaccaccacaattaggacatgaagcattgctaagagcttctctatac |
16825437 |
T |
|
| Q |
405 |
ctcatgttatcagc |
418 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16825436 |
ctcatgttatcagc |
16825423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University