View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_40 (Length: 467)
Name: NF1126_high_40
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 30 - 459
Target Start/End: Original strand, 13409770 - 13410199
Alignment:
| Q |
30 |
ctttatacaatttcagtgaccgaagaagctcgaacaagtactaccatagccacctcggcagcgtcagccgcgtcattcgaagactccggcgagcaaagga |
129 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13409770 |
ctttatacgatttcagtgaccgaagaagctcgaacaagtactaccatagccacctcggcagcgtcagccgcgtcattcgaagactccggcgagcaaagga |
13409869 |
T |
|
| Q |
130 |
gacgatacagaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13409870 |
gacgatacagaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacac |
13409969 |
T |
|
| Q |
230 |
agcagaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctgaaaatgttagatcaattatgccg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13409970 |
agcagaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctgaaaatgttagatcaattatgccg |
13410069 |
T |
|
| Q |
330 |
ccgccaccgcaacaacaaccacaacttcagtcttttccggcctccgcggttccttctggaacaccgcagcggccggttcaaggaacctctgacatgatca |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13410070 |
ccgccaccgcaacaacaaccacaacttcagtcttttccggccactgcggttccttctggaacaccgcagcggccggttcaaggaacctctgacatgatca |
13410169 |
T |
|
| Q |
430 |
gagactatttggaatattctcatattcttc |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
13410170 |
gagactatttggaatattctcatattcttc |
13410199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 10554607 - 10554739
Alignment:
| Q |
150 |
caaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagcagaagctgcagctaggg |
249 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||||| | |||| | |||||| ||||| || || || || ||||| ||||||||||||| | |
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|
| T |
10554607 |
caaagaccttgggggaaatgggcagctgaaataagagatcctaaaaaaggagcaagagtgtggcttggcacctttgaaacagctgaagctgcagctactg |
10554706 |
T |
|
| Q |
250 |
cttatgatgaagctgcattgagattcagaggaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
10554707 |
cttatgatgaagctgcattgagattcaaaggaa |
10554739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 133 - 314
Target Start/End: Complemental strand, 44331917 - 44331736
Alignment:
| Q |
133 |
gatacagaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagc |
232 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| || || || |
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|
| T |
44331917 |
gatacagaggagtaagacagagaccatggggaaaatgggcagcagaaattcgagatccacacaaagcagcaagagtatggcttggaacatttgaaactgc |
44331818 |
T |
|
| Q |
233 |
agaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctgaaaatgtt |
314 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
44331817 |
agaagctgcagcaagagcttacgatgaagctgcattaagattcagaggaaacagagcgaaactcaacttccctgaaaatgtt |
44331736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 134 - 315
Target Start/End: Complemental strand, 38653282 - 38653101
Alignment:
| Q |
134 |
atacagaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagca |
233 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||| ||||| || ||||| |
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|
| T |
38653282 |
atacagaggagtaagacagaggccatggggaaaatgggcagcagagataagagatcctttcaaagctacaagagtatggttaggtacatttgaaacagct |
38653183 |
T |
|
| Q |
234 |
gaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctgaaaatgtta |
315 |
Q |
| |
|
|||| |||||||| || |||||| ||||| ||||| | || ||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
38653182 |
gaagatgcagctaaagcctatgatcaagcttcattgcgttttagaggaaacaaagcaaaactcaacttccctgaaaatgtta |
38653101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 134 - 315
Target Start/End: Complemental strand, 43490206 - 43490025
Alignment:
| Q |
134 |
atacagaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagca |
233 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||||||| || ||||| |
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|
| T |
43490206 |
atacagaggagtaagacagagaccatggggaaaatgggcagcagagataagagatccattcaaagcagcaagagtatggttaggaacatttgaaacagct |
43490107 |
T |
|
| Q |
234 |
gaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctgaaaatgtta |
315 |
Q |
| |
|
||||| || ||||| || |||||||||||||| | | || ||||| | || ||| |||||||| |||||||||||||||| |
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|
| T |
43490106 |
gaagcagctgctagagcatatgatgaagctgctcttcgttttagaggcaacaaagccaaactcaatttccctgaaaatgtta |
43490025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 45013979 - 45013877
Alignment:
| Q |
207 |
gtatggctaggaacattcgacacagcagaagctgcagctagggcttatgatgaagctgcattgagattcagaggaagcagagcaaaactcaacttccctg |
306 |
Q |
| |
|
||||||||||||||||| || || || || |||||||| || ||||||||||||||| | ||||||| |||||||| ||| || ||||| || |||| |
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|
| T |
45013979 |
gtatggctaggaacatttgaaacggctgaggctgcagccgttgcatatgatgaagctgcactcagattcaaaggaagcaaagctaagctcaattttcctg |
45013880 |
T |
|
| Q |
307 |
aaa |
309 |
Q |
| |
|
||| |
|
|
| T |
45013879 |
aaa |
45013877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 6583050 - 6583157
Alignment:
| Q |
138 |
agaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagcagaag |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| | || ||| | |||||| ||||| ||| |||||||||| |||||||| |||| |
|
|
| T |
6583050 |
agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgacacagctgaag |
6583149 |
T |
|
| Q |
238 |
ctgcagct |
245 |
Q |
| |
|
||||||| |
|
|
| T |
6583150 |
atgcagct |
6583157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 6568891 - 6568998
Alignment:
| Q |
138 |
agaggagtgagacaaagaccatggggaaaatgggcagcagaaataagagatccacacaaagcacaaagagtatggctaggaacattcgacacagcagaag |
237 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||| | || ||| | |||||| ||||| ||| |||||||||| || ||||| |||| |
|
|
| T |
6568891 |
agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgacccaaaaaaagcagctagagtttggttaggaacatttgatacagctgaag |
6568990 |
T |
|
| Q |
238 |
ctgcagct |
245 |
Q |
| |
|
||||||| |
|
|
| T |
6568991 |
atgcagct |
6568998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 33750433 - 33750479
Alignment:
| Q |
135 |
tacagaggagtgagacaaagaccatggggaaaatgggcagcagaaat |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
33750433 |
tacagaggagtgagacaaagaccatggggtaaatgggctgctgaaat |
33750479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 33718963 - 33718997
Alignment:
| Q |
138 |
agaggagtgagacaaagaccatggggaaaatgggc |
172 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
33718963 |
agaggagtgagacagagaccatggggaaaatgggc |
33718997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 33720979 - 33721016
Alignment:
| Q |
135 |
tacagaggagtgagacaaagaccatggggaaaatgggc |
172 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| |
|
|
| T |
33720979 |
tacagaggagtgaggcagagaccatggggaaaatgggc |
33721016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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