View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_43 (Length: 452)
Name: NF1126_high_43
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 43416516 - 43416121
Alignment:
| Q |
16 |
atgggagctaaacagttgtacagcataaatagaaaacaggtaaagtaaaaaccatcattactagtagaaagggtagttaaaatatatattcatttaatca |
115 |
Q |
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| T |
43416516 |
atgggagctaaacagttgtacagcataaatagaaaacaggtaaagtaaaaaccatcattactaggagaaagggtagttaaaatatatattcatttaatca |
43416417 |
T |
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| Q |
116 |
ttgtcttcaaagttttctgtcatatgttttactatagtgattcatcattcagtattagtgaagatccccacacttttattagctaccacaaatccaagca |
215 |
Q |
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| T |
43416416 |
ttgtcttcaaagttttctatcatatgttttactatagtgattcatcattcagtattagtgaagatccccacacttttattagctaccacaaatccaagca |
43416317 |
T |
|
| Q |
216 |
aatgttagagtatatttcgtgagcg---agtaagaagtgttatatcgttggtgtgacaagtgtgagttagtgaatgttgagcaataactactttaatgtt |
312 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
43416316 |
aatgttagagtatatttcgtgagcgagtagtaagaagtgttatattgttggtgtgataagtgcgagttagtgaatgttgagcaataactattttgatgtt |
43416217 |
T |
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| Q |
313 |
gtgagtcaacatagtgaaagtgtattttgataaattttcatttgaagaggagaatatagagatgggtggatagactcactcataattcatccccct |
408 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43416216 |
gtgagtcaacatcgtgaaagtgtattttgataaattttcatttgaaggggagcatatcgagatgggtggatagactcactcataattcatccccct |
43416121 |
T |
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