View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_47 (Length: 442)
Name: NF1126_high_47
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 55060514 - 55060283
Alignment:
| Q |
30 |
ggtagaactttcattgagccatcacagaagattagagattttggtgtgaagttgaagctttcgccggtttgtgctgttcttgaagagaaaagggttgtgg |
129 |
Q |
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| T |
55060514 |
ggtagaactttcattgagccatcacagaagattagagattttggtgtgaagttgaagctttcgccggttcgtgttgttcttgaagagaaaagggttgtgg |
55060415 |
T |
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| Q |
130 |
ttgttgatgattcaattgtgagaggaacaa---catctaaaattgtgaggtagttaaaagaagctgatgctaaagaagttcacatgaggattgcatgtcc |
226 |
Q |
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| T |
55060414 |
ttgttgatgattcaattgtgagaggaacaacatcatctaaaattgcgaggttgttaaaagaagctgatgctaaagaagttcacatgaggattgcatgtcc |
55060315 |
T |
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| Q |
227 |
accaattattggttcttgttattatggtgtgg |
258 |
Q |
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| T |
55060314 |
accaattattggttcttgttattatggtgtgg |
55060283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 253 - 427
Target Start/End: Complemental strand, 55060243 - 55060069
Alignment:
| Q |
253 |
gtgtggctgggatgaaggaatttattggttgtgattcccttgcttttctacctatccatagtttgaagaagttgttgggtgatgattcttctaatttctg |
352 |
Q |
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| T |
55060243 |
gtgtggctgggattaaggaatttattcgttgtgattcccttgcttttctacctatggatagtttgaagaagttgttgggtgatgattcttctaatttctg |
55060144 |
T |
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| Q |
353 |
ttatgcttgtttcactgggaattatcctgttgaacctactgaacttaaatctaagaagaggattgatggtgtgat |
427 |
Q |
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| T |
55060143 |
ttatgcttgtttcactgggaattatcctgttgaacctactgaacttaaatctaagaagaggattgatggtgtgat |
55060069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 27356693 - 27356468
Alignment:
| Q |
36 |
actttcattgagccatcacagaagattagagattttggtgtgaagttgaagctttcgccggtttgtgctgttcttgaagagaaaagggttgtggttgttg |
135 |
Q |
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| T |
27356693 |
actttcattgagccatctcagaaaattagggattttggtgtgaagttgaagctttcgcctgttcgtgctgtgcttgaaggtaaaagggttgttgtcgttg |
27356594 |
T |
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| Q |
136 |
atgattcaattgtgagaggaacaaca---tctaaaattgtgaggtagttaaaagaagctgatgctaaagaagttcacatgaggattgcatgtccaccaat |
232 |
Q |
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| T |
27356593 |
atgactcaattgtgaggggaacaacatcgtccaagattgtgaggttgcttaaggaagcaggtgcaaaagaagttcacatgagaattgcaagtccaccaat |
27356494 |
T |
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| Q |
233 |
tattggttcttgttattatggtgtgg |
258 |
Q |
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| T |
27356493 |
tattggttcttgttactatggtgtgg |
27356468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 27356356 - 27356291
Alignment:
| Q |
325 |
tgttgggtgatgattcttctaatttctgttatgcttgtttcactgggaattatcctgttgaaccta |
390 |
Q |
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| T |
27356356 |
tgttgggtaatgattctcctaatttttgttatgcttgtttctctgggaaataccctgttgagccta |
27356291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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