View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_high_49 (Length: 440)
Name: NF1126_high_49
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_49 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 29 - 440
Target Start/End: Original strand, 2969776 - 2970186
Alignment:
| Q |
29 |
agtcttatcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggataatttctctctcttaaaagaggccttgcct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2969776 |
agtcttatcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggataatttctctctcttaaaagaggccttgcct |
2969875 |
T |
|
| Q |
129 |
gcnnnnnnnnnttaaatatacaaagtaagaataatgttgcacttagaaatttgttgttttgatacgtggacaccggtaatatgcgttgatgtccaacacg |
228 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2969876 |
gcaaaaaaaa-ttaaatatacaaagtaagaataatgttgcacttagaaatttgttattttgatacgtggacaccggtaatatgcgttgatgtccaacacg |
2969974 |
T |
|
| Q |
229 |
tgtcaaacactggacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctccaag |
328 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2969975 |
tgtcaaacactagacacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctccaag |
2970074 |
T |
|
| Q |
329 |
tcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcatat |
428 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2970075 |
tcttttgtctgtagttctcattccagtaataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcatat |
2970174 |
T |
|
| Q |
429 |
tctggtgccaaa |
440 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2970175 |
tctggtgccaaa |
2970186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 2925368 - 2925482
Alignment:
| Q |
319 |
ttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccata |
418 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| || || |||| | || ||||||||||||||||||||||||||| || |||| || || ||||| |
|
|
| T |
2925368 |
ttcctccaagtcttttgtcagtagtcctcattccggttattagctcaacaagaaccactccaaaagaatatacatctgttttatttgatactttaccata |
2925467 |
T |
|
| Q |
419 |
ttctgcatattctgg |
433 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
2925468 |
tgctgcatattctgg |
2925482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 438
Target Start/End: Complemental strand, 16330775 - 16330632
Alignment:
| Q |
295 |
ttgttacccatccaacaaggcttcttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatc |
394 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| |||||||||||| || |||||||| || || | ||| | || || |||||||| ||||| ||||| |
|
|
| T |
16330775 |
ttgttacccatcccacaagacttttgtgtccaattcttttgtctgtggtcctcattcctgttattaactgaagaagcactactccaaaggaatacacatc |
16330676 |
T |
|
| Q |
395 |
tgttctacttgacaccttgccatattctgcatattctggtgcca |
438 |
Q |
| |
|
|| | ||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
16330675 |
tgacttggttgacactttaccagattctgcatattctggtgcca |
16330632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 16331255 - 16331191
Alignment:
| Q |
35 |
atcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggata |
99 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
16331255 |
atcatccaaaaaagctgatgacaatcataggtatccatcatcctttcatcaattagatctggata |
16331191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University