View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_5 (Length: 788)

Name: NF1126_high_5
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_5
NF1126_high_5
[»] chr2 (21 HSPs)
chr2 (192-629)||(28215611-28216048)
chr2 (18-195)||(28216069-28216246)
chr2 (402-626)||(32565382-32565609)
chr2 (402-626)||(32806567-32806794)
chr2 (402-626)||(32815004-32815231)
chr2 (402-626)||(32309226-32309453)
chr2 (463-629)||(28220447-28220610)
chr2 (402-599)||(32799640-32799840)
chr2 (352-484)||(28220224-28220356)
chr2 (291-388)||(32309070-32309167)
chr2 (291-388)||(32799899-32799996)
chr2 (296-388)||(32565668-32565760)
chr2 (296-388)||(32806853-32806945)
chr2 (296-388)||(32815290-32815382)
chr2 (227-331)||(28220119-28220227)
chr2 (585-626)||(32305344-32305385)
chr2 (200-232)||(32309083-32309115)
chr2 (200-232)||(32565720-32565752)
chr2 (200-232)||(32799951-32799983)
chr2 (200-232)||(32806905-32806937)
chr2 (200-232)||(32815342-32815374)
[»] chr6 (2 HSPs)
chr6 (387-623)||(301362-301596)
chr6 (296-388)||(301229-301321)
[»] chr4 (1 HSPs)
chr4 (24-62)||(21453239-21453277)
[»] chr3 (1 HSPs)
chr3 (24-65)||(26774263-26774304)


Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 192 - 629
Target Start/End: Complemental strand, 28216048 - 28215611
Alignment:
Q  192 gttataaaaagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcccgcttctattctcttctccttcactccagc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28216048 gttataaaaagaaaatgaggagattcttcatcttcaacccaataacttcccaaacaagtcttcactttcctgcttctattctcttctccttcactccagc 28215949  T
Q  292 atcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215948 atcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaa 28215849  T
Q  392 cttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcg 491  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215848 cttcatttaatttctatcatacttcttttcgttcagtgaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcg 28215749  T
Q  492 atataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctctt 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28215748 atataatttctataaggattcttgccctgaagctgagaatattgttcgttccgctgttaccgatatttactctgatcatagagaccttgcaccttctctt 28215649  T
Q  592 cttcgtctcttctttcatgattgcttcatccaggttcc 629  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28215648 cttcgtctcttctttcatgattgcttcatccaggttcc 28215611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
Q  18 ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28216246 ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 28216147  T
Q  118 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28216146 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta 28216069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 402 - 626
Target Start/End: Complemental strand, 32565609 - 32565382
Alignment:
Q  402 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 498  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32565609 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32565510  T
Q  499 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 598  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32565509 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32565410  T
Q  599 tcttctttcatgattgcttcatccaggt 626  Q
    ||||||||||||||||||||||||||||    
T  32565409 tcttctttcatgattgcttcatccaggt 32565382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 402 - 626
Target Start/End: Complemental strand, 32806794 - 32806567
Alignment:
Q  402 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 498  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32806794 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32806695  T
Q  499 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 598  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32806694 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32806595  T
Q  599 tcttctttcatgattgcttcatccaggt 626  Q
    ||||||||||||||||||||||||||||    
T  32806594 tcttctttcatgattgcttcatccaggt 32806567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 402 - 626
Target Start/End: Complemental strand, 32815231 - 32815004
Alignment:
Q  402 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 498  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32815231 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32815132  T
Q  499 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 598  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32815131 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32815032  T
Q  599 tcttctttcatgattgcttcatccaggt 626  Q
    | ||||||||||||||||||||||||||    
T  32815031 ttttctttcatgattgcttcatccaggt 32815004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 402 - 626
Target Start/End: Original strand, 32309226 - 32309453
Alignment:
Q  402 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 498  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32309226 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32309325  T
Q  499 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 598  Q
    ||||||| ||||||||||||| |||||||  ||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32309326 ttctatagggattcttgccctcaagctgaagataatgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32309425  T
Q  599 tcttctttcatgattgcttcatccaggt 626  Q
    | ||||||||||||||||||||||||||    
T  32309426 ttttctttcatgattgcttcatccaggt 32309453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 463 - 629
Target Start/End: Original strand, 28220447 - 28220610
Alignment:
Q  463 gaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttact 562  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  28220447 gaaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcgttccgctgttaccgatatttact 28220546  T
Q  563 ctgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggttcc 629  Q
     | |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  28220547 ttaatcatagagacc-tgcaccttctcttcttcgtctct--tttcatgattgcttcatccaggttcc 28220610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 402 - 599
Target Start/End: Complemental strand, 32799840 - 32799640
Alignment:
Q  402 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 498  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32799840 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32799741  T
Q  499 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 598  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32799740 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32799641  T
Q  599 t 599  Q
    |    
T  32799640 t 32799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 352 - 484
Target Start/End: Original strand, 28220224 - 28220356
Alignment:
Q  352 ttcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgt 451  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28220224 ttcattgcagtcctttctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtgaagttagctggtatttttccgt 28220323  T
Q  452 ttgatttcagtgaaagtatcagagatggttcca 484  Q
    ||||||||| | |||| ||||||||||||||||    
T  28220324 ttgatttcaatcaaagaatcagagatggttcca 28220356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 32309070 - 32309167
Alignment:
Q  291 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 388  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32309070 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32309167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 32799996 - 32799899
Alignment:
Q  291 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 388  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||||||    
T  32799996 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaa 32799899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 32565760 - 32565668
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 388  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32565760 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32565668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 32806945 - 32806853
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 388  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||    
T  32806945 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttccctctctcagaa 32806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 32815382 - 32815290
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 388  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32815382 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32815290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 28220119 - 28220227
Alignment:
Q  227 aacccaataacttcccaaacaagtcttcact--ttcccgcttct--attctcttctccttcactccagcatcatcatcatcaagaaaatgaggagattct 322  Q
    |||| |||||||||||||||||||||  |||  |||||||||||  || ||||||||||||| ||||||||||| ||||||||||||||||||||| |||    
T  28220119 aacctaataacttcccaaacaagtctctactctttcccgcttctttatcctcttctccttcaatccagcatcattatcatcaagaaaatgaggagaatct 28220218  T
Q  323 tcatcttca 331  Q
    |||||||||    
T  28220219 tcatcttca 28220227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 585 - 626
Target Start/End: Original strand, 32305344 - 32305385
Alignment:
Q  585 ttctcttcttcgtctcttctttcatgattgcttcatccaggt 626  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32305344 ttctcttcttcgtctcttctttcatgattgcttcatccaggt 32305385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 32309083 - 32309115
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32309083 aagaaaatgaggagattcttcatcttcaaccca 32309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32565752 - 32565720
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32565752 aagaaaatgaggagattcttcatcttcaaccca 32565720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32799983 - 32799951
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32799983 aagaaaatgaggagattcttcatcttcaaccca 32799951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32806937 - 32806905
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32806937 aagaaaatgaggagattcttcatcttcaaccca 32806905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32815374 - 32815342
Alignment:
Q  200 aagaaaatgaggagattcttcatcttcaaccca 232  Q
    |||||||||||||||||||||||||||||||||    
T  32815374 aagaaaatgaggagattcttcatcttcaaccca 32815342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 387 - 623
Target Start/End: Original strand, 301362 - 301596
Alignment:
Q  387 aacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaat 486  Q
    ||||||||||| |  ||||| ||||||  ||||| ||||||||| ||||||   || |||||| |||||||||| | |||| ||||||||||||||||||    
T  301362 aacaacttcatcttctttctctcatac--cttttggttcagtcacgttagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaat 301459  T
Q  487 cttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcacctt 586  Q
    |||| |||||||||||||| ||||||| ||||| |||||||  ||||||||| |||||| ||||||||||| |||  |||||||||||||||||||||||    
T  301460 cttcaatataatttctatagggattctagccctcaagctgaagatattgttccttccgctgttaccgatatctaccttgatcatagagaccttgcacctt 301559  T
Q  587 ctcttcttcgtctcttctttcatgattgcttcatcca 623  Q
    |||||||||||||||||||||||||||||||||||||    
T  301560 ctcttcttcgtctcttctttcatgattgcttcatcca 301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 301229 - 301321
Alignment:
Q  296 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 388  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  301229 tcatcatcaagaaaatgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctttcagaa 301321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
Q  24 ttttcattaggtagctcatccttatgatgagtgagtagt 62  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  21453239 ttttcattgggtagctcatccttgtgatgagtgagtagt 21453277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
Q  24 ttttcattaggtagctcatccttatgatgagtgagtagttcc 65  Q
    |||||| || |||| |||||||||||||||||||||||||||    
T  26774263 ttttcactacgtagttcatccttatgatgagtgagtagttcc 26774304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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