View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_56 (Length: 421)

Name: NF1126_high_56
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_56
NF1126_high_56
[»] chr3 (20 HSPs)
chr3 (1-406)||(5262231-5262637)
chr3 (105-406)||(5279211-5279513)
chr3 (1-103)||(5278958-5279060)
chr3 (168-281)||(6592653-6592766)
chr3 (183-299)||(6481271-6481387)
chr3 (168-291)||(6257818-6257941)
chr3 (196-299)||(8453276-8453379)
chr3 (168-282)||(6140902-6141016)
chr3 (168-260)||(6850600-6850692)
chr3 (168-291)||(6236341-6236464)
chr3 (183-282)||(8570257-8570356)
chr3 (168-282)||(6264298-6264412)
chr3 (150-292)||(7748600-7748742)
chr3 (168-282)||(13271852-13271966)
chr3 (196-260)||(6945912-6945976)
chr3 (169-224)||(6555811-6555866)
chr3 (169-224)||(6734564-6734619)
chr3 (3-85)||(6898383-6898465)
chr3 (172-281)||(8470177-8470286)
chr3 (53-85)||(8469902-8469934)
[»] scaffold1643 (1 HSPs)
scaffold1643 (192-334)||(810-952)
[»] chr7 (1 HSPs)
chr7 (199-299)||(6574611-6574711)
[»] scaffold0958 (1 HSPs)
scaffold0958 (183-251)||(1125-1193)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 5262231 - 5262637
Alignment:
Q  1 aaaatttgctctagagaggactcaatgacccgagttccgccaagccaggcctttttcaagttggttggcaattcatttattaaaacatttacacatccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5262231 aaaatttgctctagagaggactcaatgacccgagttccgccaagccaggcctttttcaagttggttggcaattcatttattaaaacatttacacatccat 5262330  T
Q  101 gtaactttaggacataaccattcattccaaccgtacatgttat-aaatttcaaactttcaagagaagcaaatggaacagttgatgaattatagccataaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5262331 gtaactttaggacataaccattcattccaaccgtacatgttatcaaatttcaaactttcaagagaagcaaatggaacagttgatgaattatagccataaa 5262430  T
Q  200 actcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaagtggtggcaaccgagaacaaaatccaca 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5262431 actcttcaccgatgatctctattccataacattctgaaatagaaagctctttaagagagggaagcttcccaagtggtggcaaccgggaacaaaatccaca 5262530  T
Q  300 tctattcagttcaagggataccaagttgagtaaataacagtccctaagccaatgtagaaagtcagtgcctctgtagtcctcgatgatgagactattcagg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    
T  5262531 tctattcagttcaagggataccaagttgagtaaataacagtccccaagccaatgtggaaagcctgtgcctctgtagtcctcgatgatgagactattcagg 5262630  T
Q  400 ttgctat 406  Q
    |||||||    
T  5262631 ttgctat 5262637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 105 - 406
Target Start/End: Original strand, 5279211 - 5279513
Alignment:
Q  105 ctttaggacataaccattcattccaaccgtacatgttat-aaatttcaaactttcaagagaagcaaatggaacagttgatgaattatagccataaaactc 203  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  5279211 ctttagtacataaccattcattccaaccgtacatgttatcaaatttcaaattttcaagggaagcgaatggaacagttgatgaattatagccataaaactc 5279310  T
Q  204 ttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaagtggtggcaaccgagaacaaaatccacatcta 303  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |  |||||||||||||||||    
T  5279311 ttcaccgataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcccaagtggtggaaactggaaacaaaatccacatcta 5279410  T
Q  304 ttcagttcaagggataccaagttgagtaaataacagtccctaagccaatgtagaaagtcagtgcctctgtagtcctcgatgatgagactattcaggttgc 403  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5279411 ttcagttcaagggatactaaattgagtaaataacagtccccaagccaatgtggaaagccagtgcctctgtagtcctcgatgatgagactattgaggttgc 5279510  T
Q  404 tat 406  Q
    |||    
T  5279511 tat 5279513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 5278958 - 5279060
Alignment:
Q  1 aaaatttgctctagagaggactcaatgacccgagttccgccaagccaggcctttttcaagttggttggcaattcatttattaaaacatttacacatccat 100  Q
    |||||||| |||||||||||||||||||| |||||||| |||||  | |||||||||||||||||||||||||||||||| ||||| ||||||||||| |    
T  5278958 aaaatttgttctagagaggactcaatgacacgagttcctccaaggtaagcctttttcaagttggttggcaattcatttatgaaaacgtttacacatccgt 5279057  T
Q  101 gta 103  Q
    |||    
T  5279058 gta 5279060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 6592766 - 6592653
Alignment:
Q  168 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttc 267  Q
    |||||||||| |||||||||||||||| ||||| |||  ||| |||||||||||||||| |||  ||||||  ||||||| ||| |||||||| | || |    
T  6592766 aaatggaacatttgatgaattatagccgtaaaattctgtaccaatgatctctattccatcacagcctgaaaaggaaagcttcttgagagaggggaactgc 6592667  T
Q  268 ccaagtggtggcaa 281  Q
    ||||||||||||||    
T  6592666 ccaagtggtggcaa 6592653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 6481387 - 6481271
Alignment:
Q  183 tgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaagtggtggcaac 282  Q
    ||||||||  ||||| ||||||||||||||||||| |||||  | ||| | |||||||||||||||| | |||||||| || | |||||||||||||||     
T  6481387 tgaattatttccatataactcttcaccgatgatctttattcttttacagtttgaaatagaaagctccctgagagaggggagttgcccaagtggtggcaaa 6481288  T
Q  283 cgagaacaaaatccaca 299  Q
     ||||||| ||||||||    
T  6481287 tgagaacataatccaca 6481271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 6257818 - 6257941
Alignment:
Q  168 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttc 267  Q
    ||||| |||| ||||||||||||||||  ||||||||  ||| ||||||| |||||||| |||  ||||||| ||||||| ||| ||||| || | ||||    
T  6257818 aaatgcaacatttgatgaattatagccgcaaaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgagagaagggaacttc 6257917  T
Q  268 ccaagtggtggcaaccgagaacaa 291  Q
    ||||||||||||||| | ||||||    
T  6257918 ccaagtggtggcaactgggaacaa 6257941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 8453276 - 8453379
Alignment:
Q  196 taaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaagtggtggcaaccgagaacaaaatc 295  Q
    |||||||||||||| ||||||| |||||||| ||| |||||||||||||||  ||| ||| |||| ||  |||||||||||||||||  |||||| ||||    
T  8453276 taaaactcttcacctatgatctttattccatcacagtctgaaatagaaagcatcttgagaaaggggagtgtcccaagtggtggcaacaaagaacataatc 8453375  T
Q  296 caca 299  Q
    ||||    
T  8453376 caca 8453379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 6140902 - 6141016
Alignment:
Q  168 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttc 267  Q
    ||||| |||| |||||||||||||||   ||||||||  ||| |||||||||||||||| |||  ||||||| ||||||| ||| ||||| || | || |    
T  6140902 aaatgcaacatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgc 6141001  T
Q  268 ccaagtggtggcaac 282  Q
    |||||||||||||||    
T  6141002 ccaagtggtggcaac 6141016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 6850692 - 6850600
Alignment:
Q  168 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagaggg 260  Q
    |||||||||| |||||||||| ||||| |||||||||  ||| |||||||||||||||| |||  ||||||| ||||| | ||| ||||||||    
T  6850692 aaatggaacatttgatgaattgtagccgtaaaactctggaccaatgatctctattccatcacagcctgaaatggaaagattcttgagagaggg 6850600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 291
Target Start/End: Original strand, 6236341 - 6236464
Alignment:
Q  168 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttc 267  Q
    |||||||||| ||||||||||||||||  ||||||||  ||| |||| |  |||||||| |||| |||| || ||||||| ||| ||||| || | || |    
T  6236341 aaatggaacatttgatgaattatagccgcaaaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgagagaagggaactgc 6236440  T
Q  268 ccaagtggtggcaaccgagaacaa 291  Q
    ||||||||||||||| | ||||||    
T  6236441 ccaagtggtggcaactgggaacaa 6236464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 8570356 - 8570257
Alignment:
Q  183 tgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaagtggtggcaac 282  Q
    |||| ||| ||| ||||||||||  || ||||| ||||| |||||||| | |||||||||||||||||| ||| |||| |||| ||||||||| ||||||    
T  8570356 tgaactattgccgtaaaactctttgccaatgatttctataccataacaatatgaaatagaaagctccttgagataggggagctgcccaagtggcggcaac 8570257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 6264298 - 6264412
Alignment:
Q  168 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttc 267  Q
    |||||||||| ||| |||||||||||   ||||||||  ||| |||||||||| ||||| |||  ||||||| ||||||| ||| ||||| || | || |    
T  6264298 aaatggaacatttgctgaattatagcggcaaaactctgaaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagagaagggaactgc 6264397  T
Q  268 ccaagtggtggcaac 282  Q
    |||||||||||||||    
T  6264398 ccaagtggtggcaac 6264412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 292
Target Start/End: Original strand, 7748600 - 7748742
Alignment:
Q  150 caaactttcaagagaagcaaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctcc 249  Q
    |||| ||||||||||   ||||| |||| ||||||||||||||||| ||| |||| |||| || |||||||||||||  ||  ||||||| ||||||| |    
T  7748600 caaagtttcaagagatctaaatgaaacatttgatgaattatagccacaaatctctgcaccaataatctctattccatcgcagcctgaaatggaaagcttc 7748699  T
Q  250 ttaagagagggaagcttcccaagtggtggcaaccgagaacaaa 292  Q
    || |||||| | | || |||||||| ||| ||| | |||||||    
T  7748700 ttgagagagtggaactgcccaagtgatggtaactgggaacaaa 7748742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 13271966 - 13271852
Alignment:
Q  168 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttc 267  Q
    |||||||||| |||||| |||||||||  ||||||||  ||| |||||||||||||||| |||  | ||||| ||||||| ||  ||||| || | || |    
T  13271966 aaatggaacatttgatggattatagccgcaaaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcgagagaaggcaactgc 13271867  T
Q  268 ccaagtggtggcaac 282  Q
    |||||||||||||||    
T  13271866 ccaagtggtggcaac 13271852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 6945912 - 6945976
Alignment:
Q  196 taaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagaggg 260  Q
    ||||||||||| |||||||||| |||||| | ||| | ||||||||||| |||||| ||||||||    
T  6945912 taaaactcttcgccgatgatctttattccgttacagtttgaaatagaaatctccttgagagaggg 6945976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 6555866 - 6555811
Alignment:
Q  169 aatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattcc 224  Q
    ||||||||| ||| |||||||| |||||||||||||||| | ||||||| ||||||    
T  6555866 aatggaacaattgttgaattattgccataaaactcttcatcaatgatctttattcc 6555811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 6734564 - 6734619
Alignment:
Q  169 aatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattcc 224  Q
    ||||||||| ||| |||||||| |||||||||||||||| | ||||||| ||||||    
T  6734564 aatggaacaattgttgaattattgccataaaactcttcatcaatgatctttattcc 6734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 6898383 - 6898465
Alignment:
Q  3 aatttgctctagagaggactcaatgacccgagttccgccaagccaggcctttttcaagttggttggcaattcatttattaaaa 85  Q
    ||||| |||||| | ||| ||||||||| ||||||| | |||   ||||||||||||| ||| ||||||||||||||| ||||    
T  6898383 aattttctctagggcggattcaatgacctgagttccacaaaggatggcctttttcaagctggatggcaattcatttatcaaaa 6898465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 8470177 - 8470286
Alignment:
Q  172 ggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaa 271  Q
    |||||| ||| |||||| | ||||| |||||||||||| || |||| |||||||| ||| ||  | |||| ||||||||| ||| | || ||||  ||||    
T  8470177 ggaacatttgttgaattgttgccatgaaactcttcaccaattatctttattccatgacagtcacagatagcaagctccttgagacacgggagctgtccaa 8470276  T
Q  272 gtggtggcaa 281  Q
    ||||||||||    
T  8470277 gtggtggcaa 8470286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 8469902 - 8469934
Alignment:
Q  53 ttttcaagttggttggcaattcatttattaaaa 85  Q
    |||||||| ||||||||||||||||||||||||    
T  8469902 ttttcaagctggttggcaattcatttattaaaa 8469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 334
Target Start/End: Original strand, 810 - 952
Alignment:
Q  192 gccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaagtggtggcaaccgagaacaa 291  Q
    ||||| || ||||||||| ||||||| |||||||| ||| | |||||||||||| | ||| ||||| ||||||| |||||||||||| ||  | |||||     
T  810 gccatgaatctcttcaccaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatgggaacat 909  T
Q  292 aatccacatctattcagttcaagggataccaagttgagtaaat 334  Q
    |||||||| ||   ||||| ||| ||||| |||||| ||||||    
T  910 aatccacagcttaacagttgaagagatactaagttgggtaaat 952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 6574711 - 6574611
Alignment:
Q  199 aactcttcaccgatgatctctattccataacattctgaaatagaaagctccttaagagagggaagcttcccaagtggtggcaaccgagaacaaaatccac 298  Q
    ||||||||||||||||||| |||||||| |||  |||||||  |||||||||| ||| | || ||||  |||||||| || ||| | |||||||||||||    
T  6574711 aactcttcaccgatgatctttattccattacaacctgaaatgaaaagctccttgagacatgggagctgtccaagtggcggaaacagggaacaaaatccac 6574612  T
Q  299 a 299  Q
    |    
T  6574611 a 6574611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 1193 - 1125
Alignment:
Q  183 tgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctcctt 251  Q
    ||||||||  |||||||||||||  || ||||| |||||||||||||| | ||||||| ||||||||||    
T  1193 tgaattatttccataaaactctttgccaatgatttctattccataacaatatgaaatataaagctcctt 1125  T

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