View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_63 (Length: 405)
Name: NF1126_high_63
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_63 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 104 - 292
Target Start/End: Original strand, 39793512 - 39793700
Alignment:
| Q |
104 |
agatacctcctttatagtggtaattttcgcaatattttgtttgtaatcttaatgatgctttggnnnnnnngtaaagcacgtagcatttttggtgctgcgg |
203 |
Q |
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| T |
39793512 |
agatacctcctttatagtggtaattttctcaatattttgtttgtaatcttaacgatgctttggtttttttgtaaagcacgtagcatttttggtgctgcgg |
39793611 |
T |
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| Q |
204 |
ccatccaagattgagtgtgatcttgtatttttgagcatgctgtcataggatttaagtttgtttgcagtttaaactttttactatatgga |
292 |
Q |
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| T |
39793612 |
ccatccaagattgagtgtgatcttgtatttttgagcatgctgtcataggatttaagtttgtttgcagttgaaactttttactatatgga |
39793700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 276 - 395
Target Start/End: Complemental strand, 35529577 - 35529458
Alignment:
| Q |
276 |
actttttactatatggagctaaagttgcttactattctcacggaaaggtagcttcggttaaagatcggttttgctttaccttttttaatgactctcatct |
375 |
Q |
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| T |
35529577 |
acttgttactagatggagctgaagttgcttactattctcacggaaaggtagcttcggttaaagatgggttttgctttaccttttttaatgactttaatct |
35529478 |
T |
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| Q |
376 |
tttctgattgtgcttctgtg |
395 |
Q |
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| T |
35529477 |
tttctgattgtgcttttgtg |
35529458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 35537036 - 35536930
Alignment:
| Q |
288 |
atggagctaaagttgcttactattctcacggaaaggtagcttcggttaaagatcggttttgctttaccttttttaatgactctcatcttttctgattgtg |
387 |
Q |
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| T |
35537036 |
atggagctgaagtttcttactattctcacggaaaggtagcttcggttaaagat-ggttttgctttaccttttttaacggctttcatcttttctgattgtg |
35536938 |
T |
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| Q |
388 |
cttctgtg |
395 |
Q |
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||| |||| |
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| T |
35536937 |
cttttgtg |
35536930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 35577302 - 35577195
Alignment:
| Q |
288 |
atggagctaaagttgcttactattctcacggaaaggtagcttcggttaaagatcggttttgctttaccttttttaatgactctcatcttttctgattgtg |
387 |
Q |
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||||| || ||||||||||||||||||| ||||||||||||| |||||||||| |||| | |||||||| ||| |||||| |||||||||||||||||| |
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| T |
35577302 |
atggaactgaagttgcttactattctcatggaaaggtagctttggttaaagatgggttcagttttaccttgttttatgactttcatcttttctgattgtg |
35577203 |
T |
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| Q |
388 |
cttctgtg |
395 |
Q |
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||| |||| |
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| T |
35577202 |
cttttgtg |
35577195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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