View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_7 (Length: 623)
Name: NF1126_high_7
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 62 - 511
Target Start/End: Complemental strand, 47661846 - 47661397
Alignment:
| Q |
62 |
catttttgggggcattttaacctaagcacctcaagtgttataattaggtttctaggttagttttcaagattttaaccctggcctttctagttataatctt |
161 |
Q |
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| T |
47661846 |
catttttgggggcattttaacctaagcacctcaagtgttataattaggtttctaggttagttttcaagattttaaccctggcctttctagttataatctt |
47661747 |
T |
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| Q |
162 |
-gatggtttagttttaacttaccttaagttttgcaagtcttgattgtcatgggggatgctaaatgtttggcctaatttaagagaagaattaacatataaa |
260 |
Q |
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| T |
47661746 |
tgatggtttagttttatcttaccttaagttttgcaagtcttgattgtcatgggggatgctaaatgtttggcctaatttaagagaagaattaacatataaa |
47661647 |
T |
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| Q |
261 |
taagaaatttaaatgacacatttcaaata-ttagaatatcgagtgaaatgaagggaacaatagggaaaaaattacagtgttcctttagaattgtaaatat |
359 |
Q |
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| T |
47661646 |
taagaaatttaaatgacacatttcaaataattagaatatcgagtgaaatgaagggaacaatagggaaaaaatta--gtgttccttcagaattgtaaatat |
47661549 |
T |
|
| Q |
360 |
acccatacaatagggtatcttgcaatgcaaactcatccacattgcgtaacatttttctaaaacgtgcactatcctaaaacggtaacattgcatcccaata |
459 |
Q |
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| T |
47661548 |
acccatacaatagggtatcttgcaatgcaaactcatccacattgcgtaacaattttctaaaacgtgcactagcctaaaacggtaacattgcatcccaata |
47661449 |
T |
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| Q |
460 |
aatacaagtatgaatatttcttttttctttgacccagtatacattattggtc |
511 |
Q |
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| T |
47661448 |
aatacaagtatgaatatttcttttttctttgacccagtatacattattggtc |
47661397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 540 - 614
Target Start/End: Complemental strand, 47661368 - 47661294
Alignment:
| Q |
540 |
tttacagttagccttgagagcttatctccaacacgaagtcagaaaaggaccatgacacataaatgcgagtataat |
614 |
Q |
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| T |
47661368 |
tttacagttagccttgagagcttatctccaacacgaagtcagaaaaggaccatgacacataaatgcgagtataat |
47661294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 47662031 - 47661988
Alignment:
| Q |
30 |
tttaatacataaattaaagcgacactaattgtcatttttggggg |
73 |
Q |
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| T |
47662031 |
tttaatacataaattaaagcgacactaattgtcatttttggggg |
47661988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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