View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_74 (Length: 365)
Name: NF1126_high_74
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_74 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 47323522 - 47323861
Alignment:
| Q |
9 |
atcagagaaacttgcttacaagaggtttaggtgatttggaaatggagaatcgaaaagccgaggaatgggctagtcaacttcaatgttggtctatttatct |
108 |
Q |
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| T |
47323522 |
atcacagaaacttgcttacaagaggtttaggtgatttggaaatggagaatcgaaaagccgaggaatgggctagtcaacttcaatgttggtctatttatct |
47323621 |
T |
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| Q |
109 |
tctgaattgttttgcttgcaaagattacaataagtctttgaatctcatatgcaaaaaagagttcttaaatgatttgtgtgatatgtggggtggattgatg |
208 |
Q |
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| T |
47323622 |
tctgaattgttttgcttgcaaagattacaataagtctttgaatctcatatgcaaaaaagagttcttaaatgatttgtgtgatatgtggggtggattaatg |
47323721 |
T |
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| Q |
209 |
aatcacacttcaccaggtgggtttggactcattagaatcctttgttataataacattggaagnnnnnnnnttgttgagttaccaaaagttgtgaaaacac |
308 |
Q |
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| T |
47323722 |
aataacacttcaccaggtgggtttggactcattagaatcctttgttataataacattggaagaaaaaaaattgttgagttaccaaaagttgtgaaaacac |
47323821 |
T |
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| Q |
309 |
tttgtaacctctcaagatcttgtgatgattggcaatacct |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
47323822 |
tttgtaacctctcaagatcttgtgatgattggcaatacct |
47323861 |
T |
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