View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_76 (Length: 356)
Name: NF1126_high_76
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_76 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 2288959 - 2289161
Alignment:
| Q |
39 |
tataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgttattctga |
138 |
Q |
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| T |
2288959 |
tataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgttattctga |
2289058 |
T |
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| Q |
139 |
atcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgtatgttgatatagtttctcttttctctcattttcaata |
238 |
Q |
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| T |
2289059 |
atcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgtatgttgatttagtttctcttttctctcattttcaata |
2289158 |
T |
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| Q |
239 |
taa |
241 |
Q |
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||| |
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| T |
2289159 |
taa |
2289161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 2255563 - 2255391
Alignment:
| Q |
39 |
tataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgtt--attct |
136 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||| |
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| T |
2255563 |
tatagacaagtgtagtgccatggtctccccattgaaactaggtgaagaaggtaagttaggatttggttttcattctctctcttgtgatatgttaaattct |
2255464 |
T |
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| Q |
137 |
gaatcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgtatgttgat |
209 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
2255463 |
gaatcagttaaatttattccaattttcctgaattctcattttttatttttgaattttgtatgtgtatgttgat |
2255391 |
T |
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