View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_high_83 (Length: 351)
Name: NF1126_high_83
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_83 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 48700635 - 48700976
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48700635 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
48700734 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48700735 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgctgcttcactatacagg |
48700834 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700835 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcagaattcttctctccattcttcttgatattccaacactccttcttta |
48700934 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48700935 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
48700976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 42267406 - 42267065
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42267406 |
tctttaatctgatagtaccgactccagcaatttctaaggcatggtcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
42267307 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42267306 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgctgcttcactatacagg |
42267207 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267206 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcagaattcttctctccattcttcttgatattccaacactccttcttta |
42267107 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42267106 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
42267065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 30948997 - 30949338
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948997 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacactgatccttctgagataggctcataagagtaaaaccaatc |
30949096 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
30949097 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccatacatcgttgagttgtctttcgccttcagaactggttgctgcttcactatacagg |
30949196 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30949197 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgtagcttcagaattcttctctccattcttcttattattccaacactccttcttta |
30949296 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30949297 |
cgtgccctttcatgccacaaccgtagcatttgatattattct |
30949338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 2000388 - 2000048
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
|||||| | |||||||||| | ||| ||| |||||| | |||||||| |||||| | ||||||| ||| |||||||| ||||| | | |||||||||| |
|
|
| T |
2000388 |
tctttattttgatagtaccaatcccaacaacttctaaagtgtgatcattgcccatgaatacagatcattccgagataggttcataggtgcaaaaccaatc |
2000289 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcg-cctttagaactagttgctgcttcactatacag |
199 |
Q |
| |
|
|||||||||||| || ||||| || ||| | |||| |||||| |||| ||||| || |||| |||||||||||| ||||| || ||||||| |
|
|
| T |
2000288 |
cttgtgtggagtcatatgtcatgtggcgcctaagtccactatccaaccatcattgag-cgcatttccacctttagaactaattgctactctgctatacaa |
2000190 |
T |
|
| Q |
200 |
gatttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttt |
299 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||| | ||| | |||||||||||| |||| |
|
|
| T |
2000189 |
gatttctccatcatctgaggtacttgcaacacaaccttgagaggttgacgcttctgatgtcttctctccattccttttgttgttccaacactccctctta |
2000090 |
T |
|
| Q |
300 |
acgtgccctttcatgccacaaccgtagcatttgatattcttc |
341 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||| ||||||| |
|
|
| T |
2000089 |
taatgccctctcataccacaactgtagcatttgaaattcttc |
2000048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 295
Target Start/End: Original strand, 21513903 - 21514150
Alignment:
| Q |
55 |
tgtacacagatccttctgagataggctcataagagtaaaaccaatctcggtgtggagtcatgtgcc-------atgttgcacctgaatccattatccaga |
147 |
Q |
| |
|
|||||||| ||||| |||||| ||| ||||||| |||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
21513903 |
tgtacacaattccttatgagatcagctaataagagaaaaatcaatctcagtgtagagtcatgtgccaattgccatgttgcacctgaatccattatccaaa |
21514002 |
T |
|
| Q |
148 |
catcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacaggatttccccgtcatctgaggtacttgcaacacatccttgagatgttga |
247 |
Q |
| |
|
||||||||| | |||| ||||||||||||||| |||||| ||||||| |||||| || |||||| |||| ||| ||| ||||||||||||||||| |
|
|
| T |
21514003 |
tatcgttgagacttcttctacctttagaactagttattgcttcgctatacaagatttcaccatcatctaaggtgcttccaatgcatccttgagatgttga |
21514102 |
T |
|
| Q |
248 |
agcttcggaattcttctctccattcttcttgatattccaacactcctt |
295 |
Q |
| |
|
| |||| || | || ||||||| ||| || ||||||| |||||||| |
|
|
| T |
21514103 |
aacttcaaaagtattttctccatccttgttattattccaccactcctt |
21514150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 9442906 - 9443247
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9442906 |
tctttaatctgatagtaccgactccagcaatttctaaggcatggtcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
9443005 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9443006 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgctgcttcactatacagg |
9443105 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443106 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcagaattcttctctccattcttcttgatattccaacactccttcttta |
9443205 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443206 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
9443247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 24597343 - 24597642
Alignment:
| Q |
42 |
tgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatctcggtgtggagtcatgtgccatgttgcacctgaatccatta |
141 |
Q |
| |
|
|||||||| |||||| | ||||||||||| |||||||| ||||| | |||||||||| | |||||||||| | |||||| |||||||| |||| || |
|
|
| T |
24597343 |
tgatcattgcccatgaatacagatccttccgagataggttcatagctgcaaaaccaatccttgcgtggagtcatattccatgtggcacctgagtccacta |
24597442 |
T |
|
| Q |
142 |
tccagacatcgttgagtcgtctttcg-cctttagaactagttgctgcttcactatacaggatttccccgtcatctgaggtacttgcaacacatccttgag |
240 |
Q |
| |
|
|||| |||| ||||| || |||| ||||||| |||| ||| |||| | ||||||| |||||| || ||||||||||||||||| ||||| ||||||| |
|
|
| T |
24597443 |
tccaaccatcattgag-cgcatttccacctttagtactaattgatgctccgctatacaagatttctccatcatctgaggtacttgctacacaaccttgag |
24597541 |
T |
|
| Q |
241 |
atgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttctttacgtgccctttcatgccacaaccgtagcatttgatattctt |
340 |
Q |
| |
|
| ||||| ||||| || |||||||| ||||| | ||| | |||||||||||| | || | |||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
24597542 |
aggttgacgcttctgatgtcttctcttcattccttttgttgttccaacactcccttttcaaatgccctctcataccacaaccgtagcatttgaaattctt |
24597641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 27877523 - 27877864
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27877523 |
tctttaatctgatagtaccgactccagcaatttctaaggcatggtcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
27877622 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27877623 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgctgcttcactatacagg |
27877722 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877723 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcagaattcttctctccattcttcttgatattccaacactccttcttta |
27877822 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27877823 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
27877864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 8479998 - 8480078
Alignment:
| Q |
192 |
ctatacaggatttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattc |
272 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||| |
|
|
| T |
8479998 |
ctatacaagatttctccatcatctgaggtacttgcaacacaaccttgagaggttgatgcttctgatgtcttctctccattc |
8480078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 30968566 - 30968533
Alignment:
| Q |
309 |
ttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30968566 |
ttcatgccacaaccgtagcatttgatattcttct |
30968533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 5822089 - 5822430
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5822089 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
5822188 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
5822189 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgctgcttcgctatacagg |
5822288 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822289 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcagaattcttctctccattcttcttgatattccaacactccttcttta |
5822388 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822389 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
5822430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 2816077 - 2816418
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2816077 |
tctttaatctgatagtaccgactccagcaatttctaaggcatggtcatttcccatgtacactgatccttcagagataggctcataagagtaaaaccaatc |
2816176 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||| | |
|
|
| T |
2816177 |
tcagtgtggagtcatgtgccatattgcacctgaatccattatcaagacatcgttgagtcgtctttcacctttagaattggttgctgcttcactatacaag |
2816276 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816277 |
attttcccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcaaaattcttctctccattcttcttgatattccaacactccttcttta |
2816376 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2816377 |
tgtgctctttcatgccacaactgtagcatttgatattcttct |
2816418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 42 - 341
Target Start/End: Complemental strand, 42586413 - 42586114
Alignment:
| Q |
42 |
tgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatctcggtgtggagtcatgtgccatgttgcacctgaatccatta |
141 |
Q |
| |
|
|||||||| |||||| | |||||| |||| |||||||| ||||| | | |||||||||| | |||||||||| |||||||| |||||||| |||| || |
|
|
| T |
42586413 |
tgatcattgcccatgaatacagattcttccgagataggttcataggtgcaaaaccaatccttgcgtggagtcatatgccatgtggcacctgagtccacta |
42586314 |
T |
|
| Q |
142 |
tccagacatcgttgagtcgtctttcg-cctttagaactagttgctgcttcactatacaggatttccccgtcatctgaggtacttgcaacacatccttgag |
240 |
Q |
| |
|
||||| |||| ||||| || |||| |||||||||||| |||||||| | ||||||| |||||| || |||||| |||||||||| ||||| ||||||| |
|
|
| T |
42586313 |
tccagccatcattgag-cgcatttccacctttagaactaattgctgctccgctatacaagatttctccatcatctcaggtacttgctacacaaccttgag |
42586215 |
T |
|
| Q |
241 |
atgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttctttacgtgccctttcatgccacaaccgtagcatttgatattctt |
340 |
Q |
| |
|
| ||||| ||||| || |||||||| ||||| | ||| | |||||||||||| | || | ||||| |||| | ||||||||||||||||| |||||| |
|
|
| T |
42586214 |
aggttgacgcttctgatgtcttctcttcattccttttgttgttccaacactcccttttcaaatgcccgctcatacgacaaccgtagcatttgaaattctt |
42586115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 41719913 - 41719572
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41719913 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
41719814 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
41719813 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgctgcctcgctatacagg |
41719714 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719713 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcagaattcttctctccattcttcttgatattccaacactccttcttta |
41719614 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41719613 |
cgtgccctttcatgccacaaccgtagcatttaatattcttct |
41719572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 34353513 - 34353175
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34353513 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
34353414 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||| |
|
|
| T |
34353413 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgttgcctcgctatacagg |
34353314 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34353313 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcaaaattcttctctccattcttcttgatattccaacactc---cttta |
34353217 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34353216 |
cgtgccctttcatgccacaaccgtaacatttgatattcttct |
34353175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 88 - 292
Target Start/End: Original strand, 31502110 - 31502314
Alignment:
| Q |
88 |
agtaaaaccaatctcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgc |
187 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| | |||| |||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
31502110 |
agtaaaaccaatcttggtatggagtcatgttcgatgtcacacctgaatctattgtccatacatcgttgagtcgtctctcgcctttataactagttgttgc |
31502209 |
T |
|
| Q |
188 |
ttcactatacaggatttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaa |
287 |
Q |
| |
|
|| ||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||| || || ||||||| |
|
|
| T |
31502210 |
tttgatatcattgatttcattatcatctgaggtacttgcaacacatccttcagatgttaaagcttcaaaactcttctctccatttttattatcattccaa |
31502309 |
T |
|
| Q |
288 |
cactc |
292 |
Q |
| |
|
||||| |
|
|
| T |
31502310 |
cactc |
31502314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 826982 - 826641
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
826982 |
tctttaatctgatagtaccgactccagcaatttctaatgcatgatcatttcccatgtacacagatccttctgagataggctcataagagaaaaaccaatc |
826883 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
826882 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactggttgctgcttcgctatacagg |
826783 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
826782 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcagaattcttctctccattcttcttgatattccaacattccttcttta |
826683 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
826682 |
cgtgccctttcatgccacaaccgtagcatttaatattcttct |
826641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 15604172 - 15603853
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
15604172 |
tctttaatctgatagtacctacttcagaaatttctaaggcatgatcattttccatgtacactaatccttctgagatgggttcataagagtaaacccaatc |
15604073 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || | |||| || |||||| |||||| ||||||| | |
|
|
| T |
15604072 |
tcggtgcagagtcgtgtgccatgttacacctgaatccattatccagacatcgttgagtcgtgttccaaatttataaatagttgttgcttcgctatacaag |
15603973 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
15603972 |
attcccccatcatctgaggtacttgcaacacatccttgagatgttgaagcttcataagtgttctctccattctttttattattccagcacaccttcttta |
15603873 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaa |
320 |
Q |
| |
|
||||||| |||| |||||| |
|
|
| T |
15603872 |
agtgccctctcattccacaa |
15603853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 45 - 313
Target Start/End: Complemental strand, 15603691 - 15603424
Alignment:
| Q |
45 |
tcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatctcggtgtggagtcatgtgccatgttgcacctgaatccattatcc |
144 |
Q |
| |
|
||||||||||||| ||| |||||| || ||||||| ||||||||||||||| |||||||||| ||| ||| ||| |||||| ||| ||| |||||||| | |
|
|
| T |
15603691 |
tcatttcccatgtccactgatcctactaagataggttcataagagtaaaacaaatctcggtgcggattcaagtgtcatgttacacttga-tccattattc |
15603593 |
T |
|
| Q |
145 |
agacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacaggatttccccgtcatctgaggtacttgcaacacatccttgagatgt |
244 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||| |||||| ||||| || ||||||||||||| ||||||||||||| || || | | |||||| |
|
|
| T |
15603592 |
agacatcgttgagccgtcttccgcatttagaactagttgatgcttcgctatatagcatttccccgtcatatgaggtacttgcagcaaataccttagatgt |
15603493 |
T |
|
| Q |
245 |
tgaagcttcggaattcttctctccattcttcttgatattccaacactccttctttacgtgccctttcat |
313 |
Q |
| |
|
||||||||| ||| |||||||||||||||| || ||||||| |||| ||||||| ||| ||| |||| |
|
|
| T |
15603492 |
tgaagcttcagaagtcttctctccattctttttatgattccaatactcattctttaagtgtcctctcat |
15603424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 13842658 - 13842755
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaa |
98 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||| | |||||||||| ||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
13842658 |
tctttaatatgatagtaccgactccaacaatttctaaagcattgtaatttcccatgcacaatcatccttttcagataggctcataagagtaaaaccaa |
13842755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 155 - 341
Target Start/End: Original strand, 13842766 - 13842952
Alignment:
| Q |
155 |
gagtcgtctttcgcctttagaactagttgctgcttcactatacaggatttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcg |
254 |
Q |
| |
|
|||| |||||||||||||| ||||||||| ||||| |||| | ||||| || |||| || ||||| |||||||||||| ||||||||||||| | |
|
|
| T |
13842766 |
gagttgtctttcgcctttataactagttgttgctttgttatatatgattttaccatcattcaagatactttcaacacatccttaagatgttgaagctgca |
13842865 |
T |
|
| Q |
255 |
gaattcttctctccattcttcttgatattccaacactccttctttacgtgccctttcatgccacaaccgtagcatttgatattcttc |
341 |
Q |
| |
|
||| |||||| || |||||||| ||||||||||||| |||||| ||||||| ||| ||| || ||||||||||| ||||||| |
|
|
| T |
13842866 |
gaagtcttctatcagttcttcttattattccaacactcagtctttaagtgccctctcagaccataattgtagcatttgagattcttc |
13842952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 8137273 - 8137614
Alignment:
| Q |
1 |
tctttaatctgatagtaccgactccagcaatttctaaggcatgatcatttcccatgtacacagatccttctgagataggctcataagagtaaaaccaatc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8137273 |
tctttaatctgatagtaccgacttcagcaatttctaaggcatggtcatttcctatgtacattgatccttctgaaataggctcataagagtaaaaccaatc |
8137372 |
T |
|
| Q |
101 |
tcggtgtggagtcatgtgccatgttgcacctgaatccattatccagacatcgttgagtcgtctttcgcctttagaactagttgctgcttcactatacagg |
200 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| ||| |||| |||| |||| |
|
|
| T |
8137373 |
tcgatgtggagtcatatgccatgttgcacctgaatcctttatctagacatcgttgagtcatctttcgactttagaactagtcgcttcttcgctatgcagg |
8137472 |
T |
|
| Q |
201 |
atttccccgtcatctgaggtacttgcaacacatccttgagatgttgaagcttcggaattcttctctccattcttcttgatattccaacactccttcttta |
300 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
8137473 |
agttccccgtcatctgagatacttgcaacacatccttgagatattgaagcttcataagtcttctctccattcttcttattattccaagactcattcttta |
8137572 |
T |
|
| Q |
301 |
cgtgccctttcatgccacaaccgtagcatttgatattcttct |
342 |
Q |
| |
|
||| ||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
8137573 |
agtgacctctcatgccacaattgtagcatttgagattcttct |
8137614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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