View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_high_85 (Length: 349)
Name: NF1126_high_85
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_high_85 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 38726668 - 38726998
Alignment:
| Q |
16 |
attggaaggctaaaaacgttacacatagtcacaactattaactaacactactatttttgtatctttgtg----aaaacaatgcgtcttttctattatcaa |
111 |
Q |
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| T |
38726668 |
attggaaggccaaaaacgttacacatagtcacaactattaactaacactactatttttgtatattttttttttaaaacaatgcgtcttttctattatcaa |
38726767 |
T |
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| Q |
112 |
cgttgccaaatattagccggcaaagacacgtggcgggtcaaatcatttatactcatttcactttttaattattgaaatgacgaagaaaataaaggttttt |
211 |
Q |
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| T |
38726768 |
cgttgccaaatattagccggcaaagacacgtggcgggtcaaatcatttat-ctcatttcactttttaattattgaaatga---agaaaataaaggttttt |
38726863 |
T |
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| Q |
212 |
cctatattcttgatttgattgtgctaatgaatactactcctagtacactattgaattgattggaacacgagtgagacatgcaatgagttattgattggtt |
311 |
Q |
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| T |
38726864 |
cctatattcttgatttgattgtgctaatgaatactact---agttcactattgaattgattggaacacgagcgagacacgcaatgagttattgattggtt |
38726960 |
T |
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| Q |
312 |
taatttctttggggtcaaagtgaatggaagatctttat |
349 |
Q |
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| T |
38726961 |
taatttctttgtggtcaaagtgaatggaagatctttat |
38726998 |
T |
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