View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_high_9 (Length: 609)

Name: NF1126_high_9
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_high_9
NF1126_high_9
[»] chr4 (10 HSPs)
chr4 (30-601)||(38978917-38979491)
chr4 (207-286)||(50657015-50657094)
chr4 (278-344)||(38983311-38983377)
chr4 (232-281)||(50657629-50657678)
chr4 (532-600)||(18930704-18930772)
chr4 (240-286)||(6680286-6680332)
chr4 (275-340)||(51288958-51289023)
chr4 (268-344)||(5929191-5929267)
chr4 (294-346)||(33570312-33570364)
chr4 (240-284)||(50709719-50709763)
[»] chr1 (5 HSPs)
chr1 (224-338)||(46097399-46097512)
chr1 (239-308)||(3789281-3789350)
chr1 (240-344)||(11032163-11032267)
chr1 (240-344)||(11426853-11426957)
chr1 (268-344)||(42843885-42843961)
[»] chr2 (9 HSPs)
chr2 (190-310)||(35215241-35215361)
chr2 (207-310)||(35214618-35214721)
chr2 (232-300)||(3148237-3148305)
chr2 (240-287)||(42370894-42370941)
chr2 (239-308)||(26021044-26021113)
chr2 (240-302)||(9371000-9371062)
chr2 (295-344)||(4769051-4769100)
chr2 (268-345)||(44829288-44829365)
chr2 (240-288)||(42369699-42369747)
[»] chr7 (3 HSPs)
chr7 (252-345)||(46252221-46252314)
chr7 (275-345)||(8466517-8466587)
chr7 (275-319)||(46251415-46251459)
[»] chr5 (6 HSPs)
chr5 (243-344)||(6381514-6381615)
chr5 (257-345)||(4929505-4929593)
chr5 (275-346)||(38064140-38064211)
chr5 (297-347)||(6380845-6380895)
chr5 (275-344)||(3135923-3135992)
chr5 (268-336)||(38064873-38064941)
[»] scaffold0181 (1 HSPs)
scaffold0181 (275-344)||(15078-15147)
[»] chr6 (3 HSPs)
chr6 (536-600)||(28072213-28072277)
chr6 (533-600)||(30045367-30045434)
chr6 (265-310)||(2038630-2038675)
[»] chr3 (5 HSPs)
chr3 (297-344)||(46187148-46187195)
chr3 (239-308)||(50305656-50305725)
chr3 (234-303)||(51802491-51802560)
chr3 (543-594)||(13843757-13843808)
chr3 (275-341)||(46993324-46993390)
[»] chr8 (2 HSPs)
chr8 (252-345)||(36734-36827)
chr8 (278-345)||(35939-36006)
[»] scaffold0175 (1 HSPs)
scaffold0175 (304-344)||(26263-26303)


Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 30 - 601
Target Start/End: Complemental strand, 38979491 - 38978917
Alignment:
Q  30 gatttcacttttggtgctcaaactctcatccatgataatctcacgatgttcatgctttatacaattaataattattgataaataaataacaagataacag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38979491 gatttcacttttggtgctcaaactctcatccatgataatctcacgatgttcatgctttatacaattaataattattgataaataaataacaagataacag 38979392  T
Q  130 agaatggtggcttagatggtaggagaagtgtgatgccaatgaataaacagggaagaagacg--gtggagggtgagaggtgatggaggagagagaggaatg 227  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||    
T  38979391 agaatggtagcttagatggtaggagaagtgtgatgccaatgaataaacagggaagaagacacagtggagggtgagaggtgatggaggagagagaagaatg 38979292  T
Q  228 gtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatgg--tggaaaagttttccactt 325  Q
    |||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||    ||| ||||||||||||||    
T  38979291 gtaggagatagtgtattgaatgtctataataaaactatgttcttcacttaatctaatggcttaaaacaacttttctatatattgggaaagttttccactt 38979192  T
Q  326 ttccatgtgaaatgccaccaacttttgatcctagtgtaagagataattaaacgaggaatatttattatattgttgcactaaaacaataagataagaatat 425  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38979191 ttccatgtgaaatggcgccaacttttgatcctagtgtaagagataattaaacgaggaatatttattatattgttgcagtaaaacaataagataagaatat 38979092  T
Q  426 ggatcttgtttattgtattattgtttttcgatgcatagccttttaattgtctatgtctatgaacacgtgtcttgattctttatcggtaacatcacgtgta 525  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38979091 ggatcttgtttattgtattattgtacttcgatgcatagccttttaattgtctatgtctatgaacacgtgtcttgattctttatcggtaacatcacgtgta 38978992  T
Q  526 ttgattttttaagaaccgacgtccacgacggcttttactctataagcactgactcgatggtatcccttttcttttc 601  Q
    |||||| |||||||||||||||| |  | |||||||||||||| ||||||||   |||||||||||||| ||||||    
T  38978991 ttgattatttaagaaccgacgtctattatggcttttactctat-agcactgatctgatggtatccctttccttttc 38978917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 50657094 - 50657015
Alignment:
Q  207 gatggaggagagagaggaatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatgg 286  Q
    ||||||||| ||||| || ||||  ||||||||||||||||||| |||||||||||||| | ||||| ||||||| ||||    
T  50657094 gatggaggaaagagaagagtggtgagagatagtgtgttgagtgtttatgataaaactatgtacttcatttaatctgatgg 50657015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 38983311 - 38983377
Alignment:
Q  278 atctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||   |||||||||||||||| ||||    
T  38983311 atctaatggcttaaaacaacttttctatggtgggaaagttttctcattttccatgtgaaatgtcacc 38983377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 50657629 - 50657678
Alignment:
Q  232 gagatagtgtgttgagtgtctatgataaaactatattcttcacttaatct 281  Q
    |||||||||||||||||||||||||||||| ||| | ||||| |||||||    
T  50657629 gagatagtgtgttgagtgtctatgataaaattatgtacttcatttaatct 50657678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 600
Target Start/End: Complemental strand, 18930772 - 18930704
Alignment:
Q  532 ttttaagaaccgacgtccacgacggcttttactctataagcactgactcgatggtatcccttttctttt 600  Q
    |||||||| ||||||||||||||| ||||||||||||  ||||||||   |||||| |||||| |||||    
T  18930772 ttttaagagccgacgtccacgacgacttttactctatcggcactgacctaatggtagccctttcctttt 18930704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 6680286 - 6680332
Alignment:
Q  240 gtgttgagtgtctatgataaaactatattcttcacttaatctaatgg 286  Q
    ||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatgg 6680332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 51288958 - 51289023
Alignment:
Q  275 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgc 340  Q
    |||||||||||||| |||| || |||  |||||||||||||||||  || |||||||| |||||||    
T  51288958 ttaatctaatggctaaaataaatttttttatggtggaaaagttttatacctttccatgagaaatgc 51289023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 5929267 - 5929191
Alignment:
Q  268 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    |||||| |||||||||||| | ||| ||  ||||||||||||| || ||||||  |||| |||||||||||| ||||    
T  5929267 tcttcaattaatctaatggttaaaaacatttttcctatggtgggaaggttttcacctttcccatgtgaaatggcacc 5929191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 33570312 - 33570364
Alignment:
Q  294 caactttcctatggtggaaaagttttccacttttccatgtgaaatgccaccaa 346  Q
    |||||||| |||||||||||||  ||   ||||||||||||||||||||||||    
T  33570312 caactttcttatggtggaaaaggattgaccttttccatgtgaaatgccaccaa 33570364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 50709763 - 50709719
Alignment:
Q  240 gtgttgagtgtctatgataaaactatattcttcacttaatctaat 284  Q
    |||||||||||||||||||||||||| ||||  |||| |||||||    
T  50709763 gtgttgagtgtctatgataaaactatgttctctactttatctaat 50709719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 224 - 338
Target Start/End: Complemental strand, 46097512 - 46097399
Alignment:
Q  224 aatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccac 323  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| |    
T  46097512 aatggtaagagatagtgtgttgagtgtctataataaaactatgttcttcatttaatctaatggcttaaa-caactttcctatggtgggaaagttttcccc 46097414  T
Q  324 ttttccatgtgaaat 338  Q
    ||| |||||||||||    
T  46097413 tttcccatgtgaaat 46097399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 3789281 - 3789350
Alignment:
Q  239 tgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggt 308  Q
    ||||||||| || |||||||| | ||| | ||| | |||||||||||||| |||||||||||||||||||    
T  3789281 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggt 3789350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 11032163 - 11032267
Alignment:
Q  240 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatg 339  Q
    |||||||| ||| ||||||| | | | ||| | ||||||||||||||   || |||||||||| ||||||| ||| | |||| |||| |||||| |||||    
T  11032163 gtgttgagagtccatgataagaatgtgttcattacttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcccatgttaaatg 11032262  T
Q  340 ccacc 344  Q
    |||||    
T  11032263 ccacc 11032267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 11426957 - 11426853
Alignment:
Q  240 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatg 339  Q
    |||||||  ||||||||||||||| | ||||| | ||||||||||||   |||| | |||||| ||||||| ||| | || | ||||||||||  |||||    
T  11426957 gtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaactctttcccttttccatgctaaatg 11426858  T
Q  340 ccacc 344  Q
    |||||    
T  11426857 ccacc 11426853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 42843961 - 42843885
Alignment:
Q  268 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    |||||| |||||||||||| | ||| ||  ||||||||||||| || ||||||  |||| |||||||||||| ||||    
T  42843961 tcttcaattaatctaatggttaaaagcatttttcctatggtgggaaggttttcacctttcccatgtgaaatggcacc 42843885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 190 - 310
Target Start/End: Original strand, 35215241 - 35215361
Alignment:
Q  190 ggtggagggtgagaggtgatggaggagagagaggaatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggctt 289  Q
    ||||| || |||| || ||||||||| |||||  | ||||  |||||||||||||||||||||||||||||||||| | ||||| ||||||| |||| |     
T  35215241 ggtggtggatgagtggggatggaggaaagagaatagtggtgagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggtta 35215340  T
Q  290 aaatcaactttcctatggtgg 310  Q
    ||| |||||||||||||||||    
T  35215341 aaaacaactttcctatggtgg 35215361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 35214721 - 35214618
Alignment:
Q  207 gatggaggagagagaggaatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatg 306  Q
    ||||||||| ||||| || ||||  |||||||||||||||| ||||||||||||||||| | ||||| ||||||| |||| | ||| ||||||||| |||    
T  35214721 gatggaggaaagagaagagtggtgagagatagtgtgttgagcgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatg 35214622  T
Q  307 gtgg 310  Q
    ||||    
T  35214621 gtgg 35214618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 3148305 - 3148237
Alignment:
Q  232 gagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaacttt 300  Q
    ||||||||||||||||||||||| |||||||||| | ||||| ||||||| |||| | ||| |||||||    
T  3148305 gagatagtgtgttgagtgtctataataaaactatgtacttcatttaatctgatggttaaaaacaacttt 3148237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 42370894 - 42370941
Alignment:
Q  240 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggc 287  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  42370894 gtgtcgagtgtctatgataaaactatattctccactttatctaatggc 42370941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 26021113 - 26021044
Alignment:
Q  239 tgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggt 308  Q
    ||||||||| || |||||||| | ||| | ||| | |||||||||||||| |||||||||||||||||||    
T  26021113 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggt 26021044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 9371062 - 9371000
Alignment:
Q  240 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcc 302  Q
    |||||||| || |||||||||| ||| ||||||| |||||||||||||| ||||  |||||||    
T  9371062 gtgttgagagtgtatgataaaagtatgttcttcatttaatctaatggctgaaatttactttcc 9371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 4769051 - 4769100
Alignment:
Q  295 aactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    |||||||||||||||| ||||  |||| ||||||||||| ||||||||||    
T  4769051 aactttcctatggtgggaaaggattccccttttccatgttaaatgccacc 4769100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 44829288 - 44829365
Alignment:
Q  268 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 345  Q
    |||||| || |||||||| || || | |||||||||||||||||||||  |||  | || ||||||||||||||||||    
T  44829288 tcttcaattgatctaatgactaaagtgaactttcctatggtggaaaaggattcaccattcccatgtgaaatgccacca 44829365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 42369747 - 42369699
Alignment:
Q  240 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggct 288  Q
    |||||||||||||||||||||| ||| ||||  |||| |||||||||||    
T  42369747 gtgttgagtgtctatgataaaattatgttctctactttatctaatggct 42369699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 46252221 - 46252314
Alignment:
Q  252 tatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 345  Q
    |||||||||| ||| || |||| |||||  ||||||| |||||||||||||||||||| ||||||||||| |||| | || |||||||||||||    
T  46252221 tatgataaaattatgttattcaattaattcaatggctaaaatcaactttcctatggtgaaaaagttttcccctttcctatctgaaatgccacca 46252314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 8466517 - 8466587
Alignment:
Q  275 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 345  Q
    |||||||||||| | |||  |||||||| |||||||||||||||||  | || ||||||||||||||||||    
T  8466517 ttaatctaatggttaaaagtaactttcccatggtggaaaagttttcacccttcccatgtgaaatgccacca 8466587  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 46251459 - 46251415
Alignment:
Q  275 ttaatctaatggcttaaatcaactttcctatggtggaaaagtttt 319  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||    
T  46251459 ttaatctaatggctaaaatcaactttcccatggtgggaaagtttt 46251415  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 344
Target Start/End: Original strand, 6381514 - 6381615
Alignment:
Q  243 ttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgcca 342  Q
    ||||| ||||||||||| || || |||||  ||||||||| ||| | ||||  ||||||||||||||||||||||||   |||| |||||||||||||||    
T  6381514 ttgagagtctatgataagacaatgttctttgcttaatctagtggttaaaattgactttcctatggtggaaaagttttatcctttcccatgtgaaatgcca 6381613  T
Q  343 cc 344  Q
    ||    
T  6381614 cc 6381615  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 4929505 - 4929593
Alignment:
Q  257 taaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 345  Q
    ||||| ||||||||||||||||||||||   | ||  ||||||||| ||||||||||||  ||   |||| ||||||||||||||||||    
T  4929505 taaaaatatattcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacca 4929593  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 38064211 - 38064140
Alignment:
Q  275 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccaccaa 346  Q
    |||||||||||| | |||  |||||||| ||||||| |||||||||  | || |||||||||||||||||||    
T  38064211 ttaatctaatggttaaaagtaactttcccatggtgggaaagttttcacccttcccatgtgaaatgccaccaa 38064140  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 6380895 - 6380845
Alignment:
Q  297 ctttcctatggtggaaaagttttccacttttccatgtgaaatgccaccaac 347  Q
    |||||||||| |||  ||||||| |||||| ||||||||||||||||||||    
T  6380895 ctttcctatgatggggaagttttacactttcccatgtgaaatgccaccaac 6380845  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 3135992 - 3135923
Alignment:
Q  275 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    |||||||| ||||| |||| |||||||| ||||||| || |||||  || || |||||||||||||||||    
T  3135992 ttaatctagtggctaaaataaactttcccatggtgggaaggttttataccttcccatgtgaaatgccacc 3135923  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 38064873 - 38064941
Alignment:
Q  268 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaa 336  Q
    |||||| |||||||||||||| |||| ||  |||| ||| |||||||||||||  |||| |||||||||    
T  38064873 tcttcaattaatctaatggctaaaatgaatcttcccatgatggaaaagttttcacctttcccatgtgaa 38064941  T

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Target: scaffold0181 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 15147 - 15078
Alignment:
Q  275 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||||| | |||| |||||| ||||||||||    
T  15147 ttaatcaaatggctaaaatcaactgtcctatggtgggaaagttttaccctttcccatgttaaatgccacc 15078  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 536 - 600
Target Start/End: Original strand, 28072213 - 28072277
Alignment:
Q  536 aagaaccgacgtccacgacggcttttactctataagcactgactcgatggtatcccttttctttt 600  Q
    |||| ||||| |||||||||||||| ||||||| ||||||||| |||||||| |||||| |||||    
T  28072213 aagagccgacatccacgacggctttcactctatcagcactgacccgatggtagccctttcctttt 28072277  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 600
Target Start/End: Complemental strand, 30045434 - 30045367
Alignment:
Q  533 tttaagaaccgacgtccacgacggcttttactctataagcactgactcgatggtatcccttttctttt 600  Q
    ||||||| ||||| |||||||||||||| |||||||   ||||||| |||||||| |||||| |||||    
T  30045434 tttaagagccgacttccacgacggctttcactctatcgacactgacccgatggtagccctttcctttt 30045367  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 2038675 - 2038630
Alignment:
Q  265 tattcttcacttaatctaatggcttaaatcaactttcctatggtgg 310  Q
    ||||||||| ||||||||||||||||| | |||||||| |||||||    
T  2038675 tattcttcaattaatctaatggcttaagttaactttcccatggtgg 2038630  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 46187195 - 46187148
Alignment:
Q  297 ctttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||    
T  46187195 ctttcctatggtgggaaagttttacactttcccatgtgaaatgccacc 46187148  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 50305725 - 50305656
Alignment:
Q  239 tgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggt 308  Q
    ||||||||| || |||||||| | ||| | ||| | |||||||||||||| |||||||||||||||||||    
T  50305725 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggt 50305656  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 51802491 - 51802560
Alignment:
Q  234 gatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcct 303  Q
    ||||||||||||||||||| |||||||||||| | ||||| ||||||| |||| | |||  |||||||||    
T  51802491 gatagtgtgttgagtgtctgtgataaaactatgtacttcatttaatcttatggttaaaaataactttcct 51802560  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 594
Target Start/End: Original strand, 13843757 - 13843808
Alignment:
Q  543 gacgtccacgacggcttttactctataagcactgactcgatggtatcccttt 594  Q
    |||||||||||||||||| |||||||  |||||||| |||||||| ||||||    
T  13843757 gacgtccacgacggctttcactctatctgcactgacccgatggtagcccttt 13843808  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 46993390 - 46993324
Alignment:
Q  275 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgcc 341  Q
    |||||||||||||| || | |||||| | ||||||| |||||||| |||||| |||||| |||||||    
T  46993390 ttaatctaatggctaaagtgaacttttccatggtgggaaagttttacactttcccatgttaaatgcc 46993324  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 36734 - 36827
Alignment:
Q  252 tatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 345  Q
    |||||||||| | | || |||| |||||| ||||||| ||||||  ||||||||||||| |||||||||   ||  ||||||||||||||||||    
T  36734 tatgataaaattgtgttattcaattaatccaatggctaaaatcatttttcctatggtgggaaagttttcacattccccatgtgaaatgccacca 36827  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 36006 - 35939
Alignment:
Q  278 atctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 345  Q
    ||||||||||| ||||||| ||||| || |||||||||||||   |||| |||||||||||| |||||    
T  36006 atctaatggctaaaatcaaatttcccatagtggaaaagttttgtcctttcccatgtgaaatgtcacca 35939  T

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Target: scaffold0175 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 26303 - 26263
Alignment:
Q  304 atggtggaaaagttttccacttttccatgtgaaatgccacc 344  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  26303 atggtggaaaagttttacactttcccatgttaaatgccacc 26263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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