View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_1 (Length: 952)
Name: NF1126_low_1
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_1 |
 | |
|
| [»] scaffold1453 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 279 - 873
Target Start/End: Complemental strand, 30049882 - 30049252
Alignment:
| Q |
279 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnn-tggaagagaaagggacaataacaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30049882 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaaaaaaatggaagagaaagggacaataacaa |
30049783 |
T |
|
| Q |
378 |
tgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatg |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049782 |
tgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatg |
30049683 |
T |
|
| Q |
478 |
tcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagc |
554 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30049682 |
tcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagc |
30049583 |
T |
|
| Q |
555 |
aataaagtaacataaacaataaagtattgagaaaagtttt------------gtcaacactcctccttaaaacttttctggaatactcccagcttgcttc |
642 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
30049582 |
aataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttc |
30049483 |
T |
|
| Q |
643 |
ttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgatgcagttttacatctccattttgttc |
742 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30049482 |
ttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttc |
30049383 |
T |
|
| Q |
743 |
agcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccat |
842 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049382 |
agcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccat |
30049283 |
T |
|
| Q |
843 |
agcacaattggtctctcttgtacatgattca |
873 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
30049282 |
agcacaattggttcctcttgtacatgattca |
30049252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 285 - 873
Target Start/End: Complemental strand, 7162828 - 7162205
Alignment:
| Q |
285 |
tagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaa-ttagagaagnnnnnnnntggaagagaaagggacaataacaatgttta |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7162828 |
tagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaaattagagaagaaaagaaatggaagagaaagggacaataacaatgttta |
7162729 |
T |
|
| Q |
384 |
ctatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatat |
483 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162728 |
ctatgctgcaaatttaatacaaaccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcatat |
7162629 |
T |
|
| Q |
484 |
gacataaacctacttaactt---------------------gtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaag |
561 |
Q |
| |
|
||||||||||| |||||||| |||||| ||| | |||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
7162628 |
gacataaacctgcttaacttgtgcagataaccttattacttgtgcagcatagttttactaacaaaataagttaaaatgattacacacataagcaataaag |
7162529 |
T |
|
| Q |
562 |
taacataaacaataaagtattgagaaaagtttt------------gtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctc |
649 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162528 |
taacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctc |
7162429 |
T |
|
| Q |
650 |
catgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgatgcagttttacatctccattttgttcagcttct |
749 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
7162428 |
catgaacttggcactagcaagtgccttttttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttct |
7162329 |
T |
|
| Q |
750 |
cttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaa |
849 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162328 |
cttatagcatgaaatttgacattgatatgctttgctcttccatgttgaattggatttttggcagttgctatagctgatttgttgtcacaccatagcacaa |
7162229 |
T |
|
| Q |
850 |
ttggtctctcttgtacatgattca |
873 |
Q |
| |
|
||||| |||||||| |||||||| |
|
|
| T |
7162228 |
ttggttcctcttgtatatgattca |
7162205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 281 - 594
Target Start/End: Complemental strand, 30045477 - 30045140
Alignment:
| Q |
281 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnn-tggaagagaaagggacaataacaatg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30045477 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaaaaaaatggaagagaaagggacaataacaatg |
30045378 |
T |
|
| Q |
380 |
tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045377 |
tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc |
30045278 |
T |
|
| Q |
480 |
----atatgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaa |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045277 |
atatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaa |
30045178 |
T |
|
| Q |
557 |
taaagtaacataaacaataaagtattgagaaaagtttt |
594 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30045177 |
taaagtaacataaacaataaagtattcagaaaagtttt |
30045140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 44732200 - 44732162
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
44732200 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
44732162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 44734513 - 44734475
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
44734513 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
44734475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 281 - 873
Target Start/End: Complemental strand, 3946129 - 3945506
Alignment:
| Q |
281 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3946129 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaa----aaaaatggaagagaaagggacaataacaatgt |
3946034 |
T |
|
| Q |
381 |
ttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtca |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3946033 |
ttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtca |
3945934 |
T |
|
| Q |
481 |
tat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaat |
557 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945933 |
tatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaat |
3945834 |
T |
|
| Q |
558 |
aaagtaacataaacaataaagtattgagaaaagtttt------------gtcaacactcctccttaaaacttttctggaatactcccagcttgcttctta |
645 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
3945833 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttctta |
3945734 |
T |
|
| Q |
646 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgatgcagttttacatctccattttgttcagc |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3945733 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagc |
3945634 |
T |
|
| Q |
746 |
ttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagc |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945633 |
ttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagc |
3945534 |
T |
|
| Q |
846 |
acaattggtctctcttgtacatgattca |
873 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
3945533 |
acaattggttcctcttgtacatgattca |
3945506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 282 - 594
Target Start/End: Complemental strand, 3941729 - 3941398
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3941729 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaa----aaaaatggaagagaaagggacaataacaatgtt |
3941634 |
T |
|
| Q |
382 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc-- |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941633 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
3941534 |
T |
|
| Q |
480 |
--atatgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaata |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941533 |
atatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaata |
3941434 |
T |
|
| Q |
559 |
aagtaacataaacaataaagtattgagaaaagtttt |
594 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3941433 |
aagtaacataaacaataaagtattcagaaaagtttt |
3941398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 22804970 - 22804930
Alignment:
| Q |
280 |
tttgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
22804970 |
tttgttagcttttgcaaaggcagcagaagcaataagctcaa |
22804930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 284 - 873
Target Start/End: Complemental strand, 22365754 - 22365134
Alignment:
| Q |
284 |
ttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgttta |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22365754 |
ttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgttta |
22365655 |
T |
|
| Q |
384 |
ctatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatat |
483 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22365654 |
ctatactgcaaatttgatacatatcatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagttgatgtcatat |
22365555 |
T |
|
| Q |
484 |
gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagtaa |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365554 |
gacataaacctacttaacttgtgcagataaccttacttatgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
22365455 |
T |
|
| Q |
565 |
cataaacaataaagtattgagaaaagtttt------------gtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccat |
652 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22365454 |
cataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttatctggaatactcccagcttgcttcttagctccat |
22365355 |
T |
|
| Q |
653 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgatgcagttttacatctccattttgttcagcttctctt |
752 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
22365354 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctctt |
22365255 |
T |
|
| Q |
753 |
atagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattg |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365254 |
atagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattg |
22365155 |
T |
|
| Q |
853 |
gtctctcttgtacatgattca |
873 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
22365154 |
gttcctcttgtacatgattca |
22365134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 282 - 594
Target Start/End: Complemental strand, 22361369 - 22361038
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22361369 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
22361270 |
T |
|
| Q |
382 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22361269 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcat |
22361170 |
T |
|
| Q |
482 |
atgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaataaagt |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361169 |
atgacataaacctacttaacttgtgcagataaccttacttgtgcagcatagctttactaacaaaacaagttaaaataattacacacataagcaataaagt |
22361070 |
T |
|
| Q |
563 |
aacataaacaataaagtattgagaaaagtttt |
594 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
22361069 |
aacataaacaataaagtattcagaaaagtttt |
22361038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 279 - 387
Target Start/End: Original strand, 36028804 - 36028912
Alignment:
| Q |
279 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaat |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36028804 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaatagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaat |
36028903 |
T |
|
| Q |
379 |
gtttactat |
387 |
Q |
| |
|
||||||||| |
|
|
| T |
36028904 |
gtttactat |
36028912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 404 - 510
Target Start/End: Original strand, 23397192 - 23397298
Alignment:
| Q |
404 |
ataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaactt |
503 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| || |||||||| ||||||||| | | ||| ||| | |||||||||| |||||||||||| ||||||| |
|
|
| T |
23397192 |
ataccatccatacatctttcttacatatttagagtcaaatacttagtaatgacataacttatactttgttgatgtcatacgacataaacctatttaactt |
23397291 |
T |
|
| Q |
504 |
gtgcaga |
510 |
Q |
| |
|
|| |||| |
|
|
| T |
23397292 |
gtacaga |
23397298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 744 - 808
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
| Q |
744 |
gcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt |
808 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
22135264 |
gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt |
22135200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 28784872 - 28784833
Alignment:
| Q |
281 |
ttgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
28784872 |
ttgttagcttttgcaaaggcagcagaagcaataagctcaa |
28784833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 5353344 - 5353382
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5353344 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
5353382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 282 - 873
Target Start/End: Original strand, 39949304 - 39949924
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39949304 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
39949403 |
T |
|
| Q |
382 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
481 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
39949404 |
tactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagcctatgtttagctgatgtcat |
39949503 |
T |
|
| Q |
482 |
atgacataaacctacttaacttg----------------tgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
564 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949504 |
atgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
39949603 |
T |
|
| Q |
565 |
cataaacaataaagtattgagaaaagtttt------------gtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccat |
652 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949604 |
cataaacaataaagtataaagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccat |
39949703 |
T |
|
| Q |
653 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgatgcagttttacatctccattttgttcagcttctctt |
752 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949704 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctctt |
39949803 |
T |
|
| Q |
753 |
atagcatgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattg |
852 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949804 |
atagcatgaaattttacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattg |
39949903 |
T |
|
| Q |
853 |
gtctctcttgtacatgattca |
873 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
39949904 |
gttcctcttgtacatgattca |
39949924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 282
Target Start/End: Complemental strand, 39569704 - 39569425
Alignment:
| Q |
3 |
tggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39569704 |
tggaggagcagtgatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt |
39569605 |
T |
|
| Q |
103 |
ttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttga |
202 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39569604 |
ttgcgcgtttgaggaaaggtttgctcacttcacttcaaggggaagccgttgagattgatattgagaagcttgggctgcaagaaagaaaagatttgcttga |
39569505 |
T |
|
| Q |
203 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatttt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39569504 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatttt |
39569425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 39344105 - 39344378
Alignment:
| Q |
3 |
tggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt |
102 |
Q |
| |
|
||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
39344105 |
tggaggaacagtgatgctgctcagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt |
39344204 |
T |
|
| Q |
103 |
ttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttga |
202 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
39344205 |
ttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagtaagaaaagatttgcttga |
39344304 |
T |
|
| Q |
203 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39344305 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatggacaggttca |
39344378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 3 - 275
Target Start/End: Original strand, 39358681 - 39358953
Alignment:
| Q |
3 |
tggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt |
102 |
Q |
| |
|
||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
39358681 |
tggaggaacagtgatgctgctgagatcttttcaaattcttttcaccaagaagatgatgaagaatctcttaaatgggctgcaattcagaagcttcctactt |
39358780 |
T |
|
| Q |
103 |
ttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttga |
202 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
39358781 |
ttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaagcttgggttgcaagaaagaaaagatttacttga |
39358880 |
T |
|
| Q |
203 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39358881 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggataggttc |
39358953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 282 - 594
Target Start/End: Original strand, 39953696 - 39954025
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39953696 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
39953795 |
T |
|
| Q |
382 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
481 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||| |
|
|
| T |
39953796 |
tactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagtctatgtttagctgatgtcat |
39953895 |
T |
|
| Q |
482 |
atgacataaacctactta----------------acttgtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
564 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953896 |
atgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
39953995 |
T |
|
| Q |
565 |
cataaacaataaagtattgagaaaagtttt |
594 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
|
|
| T |
39953996 |
cataaacaataaagtataaagaaaagtttt |
39954025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 39552866 - 39552595
Alignment:
| Q |
3 |
tggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt |
102 |
Q |
| |
|
||||||| ||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
39552866 |
tggaggaacagtgatgctgctgagatcttttcaaattctttccaccaagaagatgatgaagaagctcttaaatgggctgcaattcagaaacttcctactt |
39552767 |
T |
|
| Q |
103 |
ttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttga |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
39552766 |
ttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccactgagatcgatgttgagaaccttgggttgcaagaaagaaaagatttacttga |
39552667 |
T |
|
| Q |
203 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggtt |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
39552666 |
aagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgacaggtt |
39552595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 39543643 - 39543371
Alignment:
| Q |
3 |
tggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt |
102 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
39543643 |
tggaggaacagtgatgctgctgagattttttctaattcttttcgccaagaagatgatgaagaagctcttaaatgggctgccattcagaaacttcctactt |
39543544 |
T |
|
| Q |
103 |
ttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttga |
202 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| || |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
39543543 |
ttgcacgtttaaggaaaggtttgctctctttgctgcaaggggaagccactgagatcgatgttgagaagcttgggttgcaagaaagaaaagatttacttga |
39543444 |
T |
|
| Q |
203 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
39543443 |
aagacttgttagacttgctgaagaggacaatgagaagtttttgctcaaactcaaggatcgaatcgacaggttc |
39543371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 39332835 - 39333112
Alignment:
| Q |
3 |
tggaggagcagagatgcagctgagattttttcaaattcttttcaccaagaagatgatgaagaagctcttaagtgggctgcaattcagaatcttcctactt |
102 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
39332835 |
tggaggaacagtgatgcagccgagattttttcaaattctttccaccaaggagatgatgaagaagctcttaaatgggctgcaattcagatccttcctactt |
39332934 |
T |
|
| Q |
103 |
ttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaagcttgggctgcaagaaagaaaagatttgcttga |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||| | | || | ||||||||||||||||| |||||| ||||||||| ||||||||||| || |
|
|
| T |
39332935 |
ttgaacgtttgaggaaaggtttgctcacttcacttcaaggtggaaccatcgagattgatgttgagaaccttgggatgcaagaaaagaaagatttgctcga |
39333034 |
T |
|
| Q |
203 |
aagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggacaggttcagatt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
39333035 |
aagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagacaggttcggatt |
39333112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 39585543 - 39585472
Alignment:
| Q |
54 |
gatgatgaagaagctcttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttg |
125 |
Q |
| |
|
||||||||||| ||| | || |||||||||||||||| ||||| ||| ||||||| ||||||| ||||||| |
|
|
| T |
39585543 |
gatgatgaagaggctttgaaatgggctgcaattcagaggcttccgactgttgcacgcttgaggagaggtttg |
39585472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 282 - 873
Target Start/End: Original strand, 196152 - 196763
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
196152 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacataaattagagaagaaaagaaatggaagagaaagagacaataacaatgtt |
196251 |
T |
|
| Q |
382 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
196252 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcat |
196351 |
T |
|
| Q |
482 |
atgacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagt |
562 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
196352 |
atgacgtaaacctacttaactcgtgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaatgattacacacataaacaataaagt |
196451 |
T |
|
| Q |
563 |
aacataaa-caataaagtattgagaaaagt---tttgtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccatgaactt |
658 |
Q |
| |
|
||||||| || ||||| || | | || || ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
|
|
| T |
196452 |
aacataattcagaaaagtttt---ataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaactt |
196548 |
T |
|
| Q |
659 |
ggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgatgcagttttacatctccattttgttcagcttctcttatagca |
758 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196549 |
ggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagca |
196648 |
T |
|
| Q |
759 |
tgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggtctct |
858 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
196649 |
tgaaatttgacattgatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcct |
196748 |
T |
|
| Q |
859 |
cttgtacatgattca |
873 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
196749 |
cttgtacatgattca |
196763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 282 - 520
Target Start/End: Original strand, 200538 - 200769
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
381 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
200538 |
tgttagcttttgtaatggtagcagaagcaataagctcaaaaacagaaa-------ttagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
200630 |
T |
|
| Q |
382 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
200631 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcat |
200730 |
T |
|
| Q |
482 |
atgacataaacctacttaacttgtgcagataatcttact |
520 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
200731 |
atgaggtaaacctacttaacttgtgcagataaccttact |
200769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 516 - 569
Target Start/End: Original strand, 200784 - 200837
Alignment:
| Q |
516 |
ttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataa |
569 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
200784 |
ttactaacaaaacaagttaaaatgattacacacataaacaataaagtaacataa |
200837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 32800678 - 32800637
Alignment:
| Q |
279 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32800678 |
ttttgttagcttttgcaaaggcagcagaagcaataagctcaa |
32800637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 32798362 - 32798325
Alignment:
| Q |
283 |
gttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32798362 |
gttagcttttgcaaaggcagcagaagcaataagctcaa |
32798325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 280 - 594
Target Start/End: Complemental strand, 1330921 - 1330588
Alignment:
| Q |
280 |
tttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
1330921 |
tttgttagcttttgtaatggcagcagaaacaataagctcaaaaacagaaaacagaaatcaaagaagaaaagaaatggaagagaaagggacaataacaatg |
1330822 |
T |
|
| Q |
380 |
tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||| ||||| ||| ||||||||| |
|
|
| T |
1330821 |
tttactatgctgcaaatttgatacataccatccttacatccttcttacatacttatagtcaaatacttactaatgactcaacctatactttgctgatgtc |
1330722 |
T |
|
| Q |
480 |
atatgacataaacctacttaacttgtgcagataa-------------------tcttactaacaaaacaagttaaaataattacacacataagcaataaa |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
1330721 |
atatgacataaacctacttaacttgtgcagataacattacttgtgcagtatagttttactaacaaaacaagttaaaatgattacacacataagcaataga |
1330622 |
T |
|
| Q |
561 |
gtaacataaacaataaagtattgagaaaagtttt |
594 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |
|
|
| T |
1330621 |
gtaacataaacaataaagtattcagacaagtttt |
1330588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 45336616 - 45336578
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
45336616 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
45336578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 45338928 - 45338890
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
45338928 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
45338890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 44238497 - 44238464
Alignment:
| Q |
49 |
aagaagatgatgaagaagctcttaagtgggctgc |
82 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
44238497 |
aagaagatgatgaagaagctcttaaatgggctgc |
44238464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1453 (Bit Score: 152; Significance: 5e-80; HSPs: 1)
Name: scaffold1453
Description:
Target: scaffold1453; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 282 - 461
Target Start/End: Complemental strand, 180 - 1
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
180 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
81 |
T |
|
| Q |
382 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
80 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 282 - 320
Target Start/End: Complemental strand, 1550514 - 1550476
Alignment:
| Q |
282 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
320 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
1550514 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
1550476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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