View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_100 (Length: 352)
Name: NF1126_low_100
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_100 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 6727204 - 6727523
Alignment:
| Q |
19 |
atttcatacaaaactgattacatttattaacaacagcttaacccaatcactcatccaaacacaactaacttatccaacataaactctcatgctacaagcc |
118 |
Q |
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| T |
6727204 |
atttcatacaaaactaattacatttattaac------ttaacccaatcactcatccaaacacaactaacttatccaacataaactctcatgctacaagcc |
6727297 |
T |
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| Q |
119 |
ttacacaagcatcttgcacgaggagtgagagaacgaatggaagactcacagaagctatcgttattccacaaatctggtgtatacaacttcaaagattcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6727298 |
ttacacaagcatcttgcacgaggagtgagagaacgaatggaagactcacagaagctatcgttattccacaaatctggtgtatacaacttcaaagattcca |
6727397 |
T |
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| Q |
219 |
acaccgttttcattgatccggtacgcgttctaaaccgtttctacaaccgcttcaccgtttctccatccacctactatccccgtttcttcaaatccctaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6727398 |
acaccgttttcattgatccggtacgcgttctaaaccgtttctacaaccgcttcaccgtttctccatccacctactatccccgtttcttcaaatccctaac |
6727497 |
T |
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| Q |
319 |
ccccaaaaccaccgttccttcatctc |
344 |
Q |
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||||||||||||||||||||| |||| |
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| T |
6727498 |
ccccaaaaccaccgttccttcttctc |
6727523 |
T |
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