View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_101 (Length: 351)
Name: NF1126_low_101
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_101 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 22769867 - 22769550
Alignment:
| Q |
1 |
agaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatattttttggtggtgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22769867 |
agaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatatttttt--tggtgg- |
22769771 |
T |
|
| Q |
101 |
aatatgtgagtatgaatgtataacagagttctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttggaaaattcacttaa |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22769770 |
----------------tgtataacagaattctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttggaaaattcacttaa |
22769687 |
T |
|
| Q |
201 |
aaagaagacttgagaaattggccacaaagagtgtattgagaattttattggagcccttaatggactttacactaatagtccatttcatggagccacaagt |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22769686 |
aaaga---cttgagaaattggccacaaagagtgtattgagaattttattggagcccttatgtgactttacactaatagtccatttcatggagccacaagt |
22769590 |
T |
|
| Q |
301 |
ttacatcgcagagtccaccacaaattgacaaggtagaatt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
22769589 |
ttacatcgcagagtccaccacaaattgataaggtacaatt |
22769550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 15528698 - 15528632
Alignment:
| Q |
170 |
gtagttgacttgacttggaaaattcacttaaaaagaagacttgagaaattggccacaaagagtgtattg |
238 |
Q |
| |
|
|||||||||||||||| || |||||||||| | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
15528698 |
gtagttgacttgacttcgacaattcacttaga--gaagacttaagaaattggccagaaagagtgtattg |
15528632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 15528589 - 15528529
Alignment:
| Q |
263 |
gactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||||| | |||||||| ||||| |
|
|
| T |
15528589 |
gactttacactaattgtccatttcatggaacccaaagtttacattgtagagtccatcacaa |
15528529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University