View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_104 (Length: 349)

Name: NF1126_low_104
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_104
NF1126_low_104
[»] chr1 (1 HSPs)
chr1 (9-349)||(38726661-38726998)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 38726661 - 38726998
Alignment:
Q  9 caagaatattggaaggctaaaaacgttacacatagtcacaactattaactaacactactatttttgtatctttgtg----aaaacaatgcgtcttttcta 104  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |     ||||||||||||||||||||    
T  38726661 caagaaaattggaaggccaaaaacgttacacatagtcacaactattaactaacactactatttttgtatattttttttttaaaacaatgcgtcttttcta 38726760  T
Q  105 ttatcaacgttgccaaatattagccggcaaagacacgtggcgggtcaaatcatttatactcatttcactttttaattattgaaatgacgaagaaaataaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||    
T  38726761 ttatcaacgttgccaaatattagccggcaaagacacgtggcgggtcaaatcatttat-ctcatttcactttttaattattgaaatga---agaaaataaa 38726856  T
Q  205 ggtttttcctatattcttgatttgattgtgctaatgaatactactcctagtacactattgaattgattggaacacgagtgagacatgcaatgagttattg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  38726857 ggtttttcctatattcttgatttgattgtgctaatgaatactact---agttcactattgaattgattggaacacgagcgagacacgcaatgagttattg 38726953  T
Q  305 attggtttaatttctttggggtcaaagtgaatggaagatctttat 349  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  38726954 attggtttaatttctttgtggtcaaagtgaatggaagatctttat 38726998  T

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