View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_105 (Length: 349)

Name: NF1126_low_105
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_105
NF1126_low_105
[»] chr1 (1 HSPs)
chr1 (16-349)||(38726668-38726998)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 38726668 - 38726998
Alignment:
Q  16 attggaaggctaaaaacgttacacatagtcacaactattaactaacactactatttttgtatctttgtg----aaaacaatgcgtcttttctattatcaa 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |     |||||||||||||||||||||||||||    
T  38726668 attggaaggccaaaaacgttacacatagtcacaactattaactaacactactatttttgtatattttttttttaaaacaatgcgtcttttctattatcaa 38726767  T
Q  112 cgttgccaaatattagccggcaaagacacgtggcgggtcaaatcatttatactcatttcactttttaattattgaaatgacgaagaaaataaaggttttt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||||    
T  38726768 cgttgccaaatattagccggcaaagacacgtggcgggtcaaatcatttat-ctcatttcactttttaattattgaaatga---agaaaataaaggttttt 38726863  T
Q  212 cctatattcttgatttgattgtgctaatgaatactactcctagtacactattgaattgattggaacacgagtgagacatgcaatgagttattgattggtt 311  Q
    ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  38726864 cctatattcttgatttgattgtgctaatgaatactact---agttcactattgaattgattggaacacgagcgagacacgcaatgagttattgattggtt 38726960  T
Q  312 taatttctttggggtcaaagtgaatggaagatctttat 349  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  38726961 taatttctttgtggtcaaagtgaatggaagatctttat 38726998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University