View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_108 (Length: 334)

Name: NF1126_low_108
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_108
NF1126_low_108
[»] chr7 (8 HSPs)
chr7 (17-334)||(35788928-35789260)
chr7 (174-334)||(35765781-35765932)
chr7 (260-334)||(35798817-35798888)
chr7 (178-270)||(35760281-35760373)
chr7 (13-70)||(35798472-35798529)
chr7 (108-153)||(35798635-35798680)
chr7 (276-334)||(35760394-35760452)
chr7 (180-234)||(35785293-35785347)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 35788928 - 35789260
Alignment:
Q  17 tagcatcatttaattgtagttgcatattcatatttcaataatagcagaactaatatatacattgtatcatcgatcaccacaaaggtatctaatataacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35788928 tagcatcatttaattgtagttgcatattcatatttcaataatagcataactaatatatacattgtatcatcgatcaccacaaaggtatctaatataacat 35789027  T
Q  117 cacatatataa---tacctagataacataacttatatcctaagcttcatacgtgtcctagctttcatgcagtccaaggcatttgatattcattcaccatg 213  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  35789028 cacatatataataatacctagataacataacttatatcctaagcttcatacgtgtcctagctttcttgtagtccaaggcatttgatattcattcaccatg 35789127  T
Q  214 cacaaggagtagctaccttgtcgacataaggataatttcccctcca------------tcctcttcctccatttcttcttcttcttccactattcatctg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||    
T  35789128 cacaaggagtagctaccttgtcgacataaggataatttcccctccatcctctccctcctcctcttcctccatttcttcttcttcttccactattcatctg 35789227  T
Q  302 atactcattagttccatgatgatatccagggtt 334  Q
    |||||||||||||||||||| ||||||||||||    
T  35789228 atactcattagttccatgatcatatccagggtt 35789260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 334
Target Start/End: Original strand, 35765781 - 35765932
Alignment:
Q  174 ctttcatgcagtccaaggcatttgatattcattcaccatgcacaaggagtagctaccttgtcgacataaggataatttcccctccatcctcttcctccat 273  Q
    ||||| |||||||||| |||| |||| |||||| ||||||||| |||||||| |||||||||  |||||| | |||||||||||      |||||||||     
T  35765781 ctttcttgcagtccaaagcatctgatcttcatttaccatgcactaggagtagttaccttgtctgcataagcaaaatttcccctc------cttcctcca- 35765873  T
Q  274 ttcttcttcttcttccactattcatctgatactcattagttccatgatgatatccagggtt 334  Q
      | ||||| |||||| |||||||||||||| ||| |||| ||||||||||||||||||||    
T  35765874 --cctcttcctcttcctctattcatctgatagtcactagtgccatgatgatatccagggtt 35765932  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 35798817 - 35798888
Alignment:
Q  260 tcctcttcctccatttcttcttcttcttccactattcatctgatactcattagttccatgatgatatccagggtt 334  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  35798817 tcctcttcctccatttct---tcttcttcctctattcatctgatactcattagtgccatgatgatatccagggtt 35798888  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 35760281 - 35760373
Alignment:
Q  178 catgcagtccaaggcatttgatattcattcaccatgcacaaggagtagctaccttgtcgacataaggataatttcccctccatcctcttcctc 270  Q
    |||||||||||||||  ||||| |||||| ||||||||| ||||||||||||||| || ||||||| | |||||||||||| ||||| |||||    
T  35760281 catgcagtccaaggcccttgatcttcatttaccatgcaccaggagtagctaccttttccacataagaaaaatttcccctccttcctcctcctc 35760373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 35798472 - 35798529
Alignment:
Q  13 aatatagcatcatttaattgtagttgcatattcatatttcaataatagcagaactaat 70  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  35798472 aatataacatcatttaattgtagtttcatattcatatttcaataatatcagtactaat 35798529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 35798635 - 35798680
Alignment:
Q  108 atataacatcacatatataatacctagataacataacttatatcct 153  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  35798635 atataacatcacatatataatacctagaaaacataacttatatcct 35798680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 35760394 - 35760452
Alignment:
Q  276 cttcttcttcttccactattcatctgatactcattagttccatgatgatatccagggtt 334  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||| || ||| |||||    
T  35760394 cttcttcttcttcctctattcatctgatattcattagtaccatgataatgtccggggtt 35760452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 35785293 - 35785347
Alignment:
Q  180 tgcagtccaaggcatttgatattcattcaccatgcacaaggagtagctaccttgt 234  Q
    |||||| ||||| ||||||| |||||| ||||||||  |||||||||||||||||    
T  35785293 tgcagtacaaggtatttgatcttcatttaccatgcagtaggagtagctaccttgt 35785347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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