View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_114 (Length: 328)

Name: NF1126_low_114
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_114
NF1126_low_114
[»] scaffold0147 (2 HSPs)
scaffold0147 (149-231)||(38135-38217)
scaffold0147 (40-106)||(38266-38332)
[»] chr4 (2 HSPs)
chr4 (149-231)||(3458637-3458719)
chr4 (40-106)||(3458768-3458834)


Alignment Details
Target: scaffold0147 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 38217 - 38135
Alignment:
Q  149 cccaacattctcaatcttcgttcattcaatcgaattttccatttcaattgattcgaatcgtgtttttctcctcatcaatggag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38217 cccaacattctcaatcttcgttcattcaatcgaattttccatttcaattgattcgaatcgtgtttttctcctcatcaatggag 38135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 38332 - 38266
Alignment:
Q  40 tctcattcattcatctccacgtcattttcatgagcgagagagttgaagagaaaactgacacactcag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38332 tctcattcattcatctccacgtcattttcatgagcgagagagtttaagagaaaactgacacactcag 38266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 3458719 - 3458637
Alignment:
Q  149 cccaacattctcaatcttcgttcattcaatcgaattttccatttcaattgattcgaatcgtgtttttctcctcatcaatggag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3458719 cccaacattctcaatcttcgttcattcaatcgaattttccatttcaattgattcgaatcgtgtttttctcctcatcaatggag 3458637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 3458834 - 3458768
Alignment:
Q  40 tctcattcattcatctccacgtcattttcatgagcgagagagttgaagagaaaactgacacactcag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3458834 tctcattcattcatctccacgtcattttcatgagcgagagagtttaagagaaaactgacacactcag 3458768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University