View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_116 (Length: 328)
Name: NF1126_low_116
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_116 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 23919398 - 23919158
Alignment:
| Q |
13 |
aatattacaatgtgacaaagactatgtaatcactataaatgnnnnnnnn--ggaagtaattggagaaatatttcacattgtaccaacttaaactctgtca |
110 |
Q |
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| T |
23919398 |
aatattacaatgtgacaaagactatgtaatcactataaatgaaaaaaaaaaggaagtaattggagaaatatttcacattgtaccaacttaaactctgtca |
23919299 |
T |
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| Q |
111 |
acaggagagagtggtggaactgaattataatatttagttgccatctccttggaattcagttccttactcatatccaaggtgtttggtagtttcttgctgc |
210 |
Q |
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| T |
23919298 |
acaggagagagtggtggaactgaattataatatttagttgctatctccttggaattcagttccttactcatatccaaggtgtttggtagtttcttgctgc |
23919199 |
T |
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| Q |
211 |
ttaaaagagaaacagatataaagaaagcttgtaaattagtg |
251 |
Q |
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| T |
23919198 |
ttaaaagagaaacagatataaagaaagcttgtaaattagtg |
23919158 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 49425025 - 49425065
Alignment:
| Q |
255 |
tatcataggtcaaccatttggcgatgaaacctgatatagcc |
295 |
Q |
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| T |
49425025 |
tatcataggtcaaccatttggcgatgaaacctgatatagcc |
49425065 |
T |
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