View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_118 (Length: 321)
Name: NF1126_low_118
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_118 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 2271804 - 2272108
Alignment:
| Q |
17 |
atgaattcaatgctgaaatttaagatgaatattgttcttctacagaggggattttacaccaactaaaatgttcataattaaagtagttacaatgttggtg |
116 |
Q |
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| T |
2271804 |
atgaattcaatgctgaaatttaagatgaatattgttcttctacagaggggattttacaccaactaaaatgttcataattaaagtagttacaatgttggtg |
2271903 |
T |
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| Q |
117 |
taatgtggtaagtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaatgcttttgtatttactggcttcctgcgtttctgg |
216 |
Q |
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| T |
2271904 |
taatgtggtaagtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaatgcttttgtatttactggcttcctgcgtttctgg |
2272003 |
T |
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| Q |
217 |
tttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactagttttgggcttatttttgctccctgaagccaattg |
316 |
Q |
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| T |
2272004 |
tttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactagttttgggcttatttttgctccctgaagccaattg |
2272103 |
T |
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| Q |
317 |
tcctg |
321 |
Q |
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||||| |
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| T |
2272104 |
tcctg |
2272108 |
T |
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