View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_119 (Length: 321)
Name: NF1126_low_119
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_119 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 49522488 - 49522337
Alignment:
| Q |
4 |
atgtcgaagaatatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactcaagaacaatctagaaggctttgaaggctttcatgaga |
103 |
Q |
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| T |
49522488 |
atgtcaaagattatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactcaagaataatctagaagg---------ctttcatgaga |
49522398 |
T |
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| Q |
104 |
ctcctcagttcactgctgacgattactcgttgctatatacgtacgtacgtttccctgaaacaat |
167 |
Q |
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| T |
49522397 |
---ctcagttcactgctgacgattactcgttgctatatacgtacgtacgtttccctgaaacaat |
49522337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 49522270 - 49522211
Alignment:
| Q |
233 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtat |
292 |
Q |
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| T |
49522270 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtat |
49522211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 49532818 - 49532746
Alignment:
| Q |
15 |
tatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactcaagaacaatctagaaggcttt |
87 |
Q |
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| T |
49532818 |
tatcaactttgaacaaggatggagtattatgcagaagggaatcaagaagctccagaacattctagaaggcttt |
49532746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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