View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_12 (Length: 596)
Name: NF1126_low_12
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 5e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 244 - 442
Target Start/End: Complemental strand, 49522525 - 49522337
Alignment:
| Q |
244 |
aatcaatatttcattgcagct--ctcaattcaccaacatgtcaaagattatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactc |
341 |
Q |
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| T |
49522525 |
aatcaatatttcattgcagctttctcaattcaccaacatgtcaaagattatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactc |
49522426 |
T |
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| Q |
342 |
aagaacaatctagaaggctttgaaggctttcatgagactcctcagttcactgctgacgattactcgttgctatatacgtacgtacgtttccctgaaacaa |
441 |
Q |
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| T |
49522425 |
aagaataatctagaagg---------ctttcatgaga---ctcagttcactgctgacgattactcgttgctatatacgtacgtacgtttccctgaaacaa |
49522338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 508 - 567
Target Start/End: Complemental strand, 49522270 - 49522211
Alignment:
| Q |
508 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtat |
567 |
Q |
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| T |
49522270 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtat |
49522211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 49522699 - 49522634
Alignment:
| Q |
84 |
tgttgctataaaacgatcaaaaggcatgcatagctataggttaacttcgctttgcatcaaacaaactttc |
153 |
Q |
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| T |
49522699 |
tgttgctataaaacgatcaaaaggcat----agctataggttaacttcgctttgcatcaaacaaactttc |
49522634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 49532829 - 49532746
Alignment:
| Q |
279 |
atgtcaaagattatcaactttgaagaaggatggggttttatccagcaaggtatcaagaaactcaagaacaatctagaaggcttt |
362 |
Q |
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| T |
49532829 |
atgtcaaacattatcaactttgaacaaggatggagtattatgcagaagggaatcaagaagctccagaacattctagaaggcttt |
49532746 |
T |
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