View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_120 (Length: 320)
Name: NF1126_low_120
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_120 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 27835166 - 27835435
Alignment:
| Q |
12 |
tatactacatatttattgagtcaaattatcatcaataaagcgcatgaattatatgctaactgnnnnnnncggttgattataattaaaatatttctaatat |
111 |
Q |
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| T |
27835166 |
tatactacatatttattgagtcaaattatcattaataaagcgcatgaattatatgctaactgaaaaaaacggttgattataattaaaatatttctaatat |
27835265 |
T |
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| Q |
112 |
aaaatatcattcactaatttatttttggctataaataaggtcgtgtaaaaatatttttctatcgtaaaacttgaaatacaaaaatcttcatcaatttaat |
211 |
Q |
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| T |
27835266 |
aaaatatcattcactaatttatttttggctataaataaggtcatgtaaaaatacttttctatcgtaaaacttgaaatacaaaaatcttcatcaatttaat |
27835365 |
T |
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| Q |
212 |
aaagattgggaaaatataaatattgaggaaagttatggcattaaaccagatgaagaaatgtatcacctta |
281 |
Q |
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| T |
27835366 |
aaagattgggaaaatataaatattgaggaaagttatggcattaaaccagatgaagaaatgtatcacctta |
27835435 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 24649313 - 24649224
Alignment:
| Q |
164 |
atttttctatcgtaaaacttgaaatacaaaaatcttcatcaatttaataaagattgggaaaatataaatattgaggaaagttatggcatt |
253 |
Q |
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|||||||||| ||||||||||||| ||| ||| || || |||||||| ||| ||||||||||| ||||||| |||||||||||||| |
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| T |
24649313 |
atttttctattgtaaaacttgaaacacagaaaaattaatatatttaatagtgatcaggaaaatataattattgagaaaagttatggcatt |
24649224 |
T |
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