View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_123 (Length: 315)

Name: NF1126_low_123
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_123
NF1126_low_123
[»] chr2 (28 HSPs)
chr2 (29-313)||(16576215-16576498)
chr2 (77-307)||(38576810-38577039)
chr2 (166-307)||(16863430-16863570)
chr2 (126-294)||(35370382-35370552)
chr2 (154-277)||(9050074-9050197)
chr2 (203-307)||(2248934-2249038)
chr2 (154-263)||(28282667-28282776)
chr2 (29-266)||(9050119-9050356)
chr2 (37-289)||(34176695-34176948)
chr2 (166-242)||(17606589-17606665)
chr2 (218-292)||(34176631-34176705)
chr2 (179-274)||(38333818-38333913)
chr2 (154-277)||(38576726-38576840)
chr2 (29-104)||(38576931-38577006)
chr2 (141-286)||(25606360-25606506)
chr2 (205-245)||(2909857-2909897)
chr2 (29-105)||(16863461-16863537)
chr2 (198-277)||(13712743-13712822)
chr2 (29-100)||(35371121-35371192)
chr2 (40-105)||(35370403-35370468)
chr2 (36-150)||(35373664-35373781)
chr2 (206-259)||(35373728-35373781)
chr2 (29-93)||(28282667-28282731)
chr2 (198-274)||(35371117-35371193)
chr2 (172-235)||(13784444-13784507)
chr2 (228-292)||(40374123-40374184)
chr2 (188-281)||(13712902-13712995)
chr2 (30-94)||(2248931-2248995)
[»] chr5 (34 HSPs)
chr5 (137-277)||(2243248-2243388)
chr5 (29-307)||(40483655-40483931)
chr5 (155-277)||(973114-973236)
chr5 (29-139)||(2243310-2243425)
chr5 (34-292)||(22780174-22780431)
chr5 (164-307)||(39808191-39808334)
chr5 (158-307)||(17736852-17737000)
chr5 (129-239)||(17739907-17740018)
chr5 (164-277)||(17736713-17736826)
chr5 (151-287)||(41264366-41264503)
chr5 (154-266)||(7215417-7215529)
chr5 (30-92)||(22780339-22780401)
chr5 (226-307)||(972802-972883)
chr5 (133-277)||(7215224-7215368)
chr5 (156-273)||(41264536-41264653)
chr5 (179-263)||(2822597-2822681)
chr5 (205-281)||(14138544-14138620)
chr5 (190-250)||(40483880-40483940)
chr5 (225-292)||(37077641-37077707)
chr5 (205-290)||(972874-972959)
chr5 (165-277)||(7982214-7982327)
chr5 (204-277)||(37077763-37077836)
chr5 (137-252)||(5205469-5205585)
chr5 (29-137)||(17736748-17736856)
chr5 (211-262)||(39730312-39730363)
chr5 (132-249)||(26105266-26105383)
chr5 (207-260)||(7113616-7113669)
chr5 (29-94)||(7215462-7215527)
chr5 (203-248)||(26105493-26105538)
chr5 (29-90)||(41264393-41264454)
chr5 (207-284)||(7982382-7982459)
chr5 (29-93)||(7215291-7215354)
chr5 (29-105)||(14138550-14138626)
chr5 (34-110)||(37077760-37077836)
[»] chr7 (31 HSPs)
chr7 (74-313)||(27651379-27651616)
chr7 (125-277)||(23944079-23944231)
chr7 (31-274)||(34891371-34891612)
chr7 (203-277)||(34891536-34891610)
chr7 (173-277)||(32138854-32138958)
chr7 (29-171)||(32138880-32139024)
chr7 (127-248)||(32962311-32962434)
chr7 (206-284)||(33192336-33192414)
chr7 (29-150)||(23944037-23944157)
chr7 (128-223)||(31152823-31152919)
chr7 (222-293)||(4674895-4674966)
chr7 (29-92)||(27651504-27651566)
chr7 (128-277)||(31171384-31171535)
chr7 (154-277)||(42012804-42012926)
chr7 (205-258)||(3191567-3191620)
chr7 (162-247)||(33362369-33362454)
chr7 (203-292)||(43208734-43208823)
chr7 (127-263)||(44754928-44755065)
chr7 (140-270)||(757877-758007)
chr7 (143-260)||(22593510-22593624)
chr7 (37-87)||(8354394-8354444)
chr7 (207-257)||(8354394-8354444)
chr7 (228-277)||(29152350-29152399)
chr7 (225-277)||(8900670-8900722)
chr7 (58-277)||(8900673-8900892)
chr7 (210-307)||(29152493-29152587)
chr7 (35-88)||(3191567-3191620)
chr7 (254-307)||(32988567-32988620)
chr7 (212-264)||(31152738-31152790)
chr7 (138-245)||(42012670-42012775)
chr7 (29-93)||(44754928-44754992)
[»] chr1 (40 HSPs)
chr1 (29-306)||(34601435-34601710)
chr1 (127-307)||(38839582-38839761)
chr1 (121-277)||(49897873-49898030)
chr1 (136-277)||(3232131-3232273)
chr1 (29-239)||(67967-68178)
chr1 (154-287)||(52432654-52432786)
chr1 (169-277)||(68100-68208)
chr1 (154-252)||(3367810-3367908)
chr1 (127-266)||(5500739-5500878)
chr1 (203-277)||(46080974-46081048)
chr1 (158-250)||(7104295-7104387)
chr1 (29-105)||(52432666-52432742)
chr1 (162-277)||(52432836-52432951)
chr1 (29-292)||(3231946-3232209)
chr1 (27-112)||(46080969-46081054)
chr1 (165-292)||(15321029-15321156)
chr1 (137-220)||(41148568-41148651)
chr1 (222-292)||(2534433-2534503)
chr1 (131-248)||(34601366-34601484)
chr1 (165-277)||(44330466-44330578)
chr1 (164-277)||(24874601-24874715)
chr1 (212-277)||(10775166-10775231)
chr1 (180-281)||(35956982-35957083)
chr1 (172-260)||(10775037-10775125)
chr1 (154-242)||(12145005-12145093)
chr1 (255-307)||(42819472-42819524)
chr1 (179-277)||(24873768-24873867)
chr1 (29-103)||(5500812-5500885)
chr1 (35-89)||(38839661-38839715)
chr1 (199-277)||(42819624-42819702)
chr1 (244-314)||(45136757-45136827)
chr1 (29-86)||(3367806-3367863)
chr1 (42-111)||(10775162-10775231)
chr1 (29-94)||(49897886-49897951)
chr1 (29-111)||(44330462-44330544)
chr1 (198-259)||(7749024-7749085)
chr1 (218-307)||(46080822-46080910)
chr1 (244-292)||(3367746-3367794)
chr1 (179-235)||(7104215-7104271)
chr1 (29-89)||(7749024-7749084)
[»] chr6 (13 HSPs)
chr6 (130-264)||(32047190-32047325)
chr6 (127-277)||(32342603-32342753)
chr6 (35-292)||(20067904-20068160)
chr6 (127-231)||(32047039-32047144)
chr6 (34-186)||(32342523-32342676)
chr6 (37-98)||(32047186-32047247)
chr6 (207-266)||(23577165-23577224)
chr6 (131-260)||(7556040-7556171)
chr6 (231-291)||(20206481-20206541)
chr6 (231-291)||(22100504-22100564)
chr6 (77-188)||(26236689-26236799)
chr6 (35-90)||(7556116-7556171)
chr6 (37-94)||(23577167-23577224)
[»] chr4 (15 HSPs)
chr4 (35-247)||(25062352-25062565)
chr4 (128-277)||(22050855-22051005)
chr4 (204-277)||(15131574-15131647)
chr4 (175-301)||(20512797-20512923)
chr4 (154-277)||(25062493-25062616)
chr4 (34-99)||(15131574-15131639)
chr4 (203-252)||(22050725-22050774)
chr4 (205-277)||(20512668-20512740)
chr4 (32-88)||(22050719-22050775)
chr4 (31-99)||(54000043-54000111)
chr4 (211-274)||(4115389-4115452)
chr4 (207-266)||(25234202-25234261)
chr4 (37-99)||(25234202-25234264)
chr4 (203-277)||(54000045-54000119)
chr4 (228-288)||(44591971-44592031)
[»] chr8 (26 HSPs)
chr8 (127-277)||(29969101-29969252)
chr8 (121-307)||(7405477-7405660)
chr8 (205-307)||(34695802-34695904)
chr8 (175-277)||(35574610-35574712)
chr8 (175-305)||(37010315-37010445)
chr8 (29-280)||(35574634-35574884)
chr8 (29-229)||(32166629-32166825)
chr8 (190-294)||(6630524-6630628)
chr8 (170-292)||(7590280-7590402)
chr8 (163-277)||(32166593-32166707)
chr8 (198-275)||(12736059-12736136)
chr8 (172-235)||(29093581-29093644)
chr8 (132-252)||(6630308-6630429)
chr8 (132-252)||(6803868-6803989)
chr8 (29-112)||(12736052-12736135)
chr8 (219-292)||(30547336-30547409)
chr8 (249-314)||(39280919-39280984)
chr8 (29-94)||(37010339-37010404)
chr8 (37-117)||(29969091-29969170)
chr8 (29-100)||(6630533-6630604)
chr8 (29-64)||(29093582-29093617)
chr8 (207-266)||(31475052-31475111)
chr8 (210-264)||(33897753-33897807)
chr8 (29-89)||(7405552-7405612)
chr8 (154-230)||(26086801-26086876)
chr8 (31-99)||(33897748-33897816)
[»] chr3 (21 HSPs)
chr3 (133-277)||(39341202-39341347)
chr3 (85-232)||(2562969-2563115)
chr3 (126-277)||(54437809-54437961)
chr3 (29-306)||(34761947-34762222)
chr3 (171-292)||(13283806-13283927)
chr3 (29-292)||(54437625-54437887)
chr3 (127-307)||(7938039-7938220)
chr3 (154-262)||(20519245-20519353)
chr3 (165-281)||(48646411-48646526)
chr3 (132-234)||(51260553-51260654)
chr3 (212-292)||(21570356-21570436)
chr3 (207-275)||(42091793-42091861)
chr3 (228-314)||(7641814-7641900)
chr3 (29-292)||(20519290-20519556)
chr3 (213-292)||(6138487-6138566)
chr3 (31-94)||(39341215-39341278)
chr3 (155-259)||(45228277-45228378)
chr3 (203-312)||(46303339-46303447)
chr3 (29-105)||(48646417-48646492)
chr3 (37-201)||(42091793-42091955)
chr3 (195-277)||(34761943-34762025)
[»] scaffold0136 (1 HSPs)
scaffold0136 (140-244)||(36907-37012)
[»] scaffold1743 (1 HSPs)
scaffold1743 (210-292)||(772-853)
[»] scaffold0564 (3 HSPs)
scaffold0564 (226-292)||(5456-5522)
scaffold0564 (29-70)||(5293-5334)
scaffold0564 (204-241)||(5298-5335)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 313
Target Start/End: Complemental strand, 16576498 - 16576215
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  16576498 agatggagattgcatgttaaatgaaggatatgaagatgtttgttgtttttgaaatgaaaatgataaatgattgtaag-aaaaaactctatccgtggggcc 16576400  T
Q  129 tacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 228  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16576399 tacgttaccccttgatgaattgggttaatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 16576300  T
Q  229 tgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgctaggg 313  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||||||||||| |||||||||||| |||||    
T  16576299 tgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaagataatttttctttgataggg 16576215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 77 - 307
Target Start/End: Original strand, 38576810 - 38577039
Alignment:
Q  77 ttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaatttacctctaatgataagta 176  Q
    |||||||||||||||||| ||||| |||| ||||| || ||||  || ||||||||||||||||| |||||||||| ||||||||  ||||||| || ||    
T  38576810 ttgagatgaaaatggtaactgattgtaagaaaaaacct-tatcgatgaggcctacattacccctttatgaattggggtaatttactcctaatgacaaata 38576908  T
Q  177 tgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaaga 276  Q
    ||||| |||| ||| ||||| |||| ||| ||||||||||||||||| ||||||||||| ||| |||||||| ||| ||||||||||||| ||| ||| |    
T  38576909 tgatttgattatggtacgaaagagatggaaatcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgattataaaa 38577008  T
Q  277 ataaagatgaagaaaagaaaatttttctttg 307  Q
    ||||| ||||||||||  | |||||||||||    
T  38577009 ataaatatgaagaaaatgagatttttctttg 38577039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 166 - 307
Target Start/End: Complemental strand, 16863570 - 16863430
Alignment:
Q  166 aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaac 265  Q
    ||||| ||||| |||||||||||  |||||| |||| | ||||||||| |||||| ||| |||||||||| |||||||||||||||| ||||||||||||    
T  16863570 aatgacaagtaggattcgattctataacgaaggagatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaac 16863471  T
Q  266 taattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    | |||||||||||||||| ||||||||   ||||||||||||    
T  16863470 tgattgtaagaataaaga-gaagaaaaaggaatttttctttg 16863430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 294
Target Start/End: Complemental strand, 35370552 - 35370382
Alignment:
Q  126 gcctacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    ||||||||||||| ||||||||||| || |||||| |  ||||||| ||||||| |||||| ||||||  ||||||| ||  || |||||||||||||||    
T  35370552 gcctacattacccgttgatgaattgagggtaatttgctcctaatgacaagtatgtttcgat-ctggaataaatgagatgggtattacatgttgaatgaag 35370454  T
Q  225 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaaga--ataaagatgaagaaaaga 294  Q
    |||| ||||||||||| | |||||||||  |||||||||||| |||||||||   |||||||||||||||||    
T  35370453 gagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaagatcgtaaagatgaagaaaaga 35370382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 9050074 - 9050197
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    |||||||||  |||||| ||| ||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||| | |     
T  9050074 taatttacccttaatgacaagcatgattcgattttgtaacgaatgagatggagatcatatgttgaatgatggagatgaagaagtttgttgttcttcatat 9050173  T
Q  254 gaaaatggtaactaattgtaagaa 277  Q
    ||||||||||||| || |||||||    
T  9050174 gaaaatggtaactgatcgtaagaa 9050197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 2248934 - 2249038
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaattttt 302  Q
    ||||| |||||||| ||| ||| |||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |  ||||||    
T  2248934 ggagaccacatgttcaattaagaagatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaatatgattttt 2249033  T
Q  303 ctttg 307  Q
    |||||    
T  2249034 ctttg 2249038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 28282776 - 28282667
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    ||||||||| ||||| | |||||  ||| |||| |||||||||||||| ||||||||||| |||||||||| |||| ||||||||||||||| | ||||     
T  28282776 taatttacccctaataacaagtaaaatttgattatggaacgaatgagatggagatcacatattgaatgaagcagataaagaagtttgatgttatggagat 28282677  T
Q  254 gaaaatggta 263  Q
    ||||||||||    
T  28282676 gaaaatggta 28282667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 266
Target Start/End: Original strand, 9050119 - 9050356
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||||| ||||||||||| ||| ||||||| ||||||||||||| | ||||||||||||| ||||  ||| ||||||| | |||    | | ||    
T  9050119 agatggagatcatatgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaactgatcgtaa-gaaaaaattatattgacgagacc 9050217  T
Q  129 tacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
     |||||| | |||||||||||| || |||||||||||||||||  |||| ||||||||| || ||| ||  ||| | | |||| ||||| |||||| |||    
T  9050218 aacattatctcttgatgaattgagggtaatttacctctaatgactagtaggattcgattatgaaacaaagaagatgtaaatcaaatgttaaatgaaagag 9050317  T
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaact 266  Q
    ||||| | | ||||| || || ||| |||||||| ||||    
T  9050318 atgaaaatgcttgatatttttaagatgaaaatggcaact 9050356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 289
Target Start/End: Complemental strand, 34176948 - 34176695
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataagga--aaaaactctatccgtggggcctacatt 134  Q
    |||||||||||||||||| | ||| | | |||||  |||||||||||||||||||||| | ||| ||||||  |||||  |||||  ||  ||||| |||    
T  34176948 atcacatgttgaatgaagaagatgtacaagtttg--gttcttgagatgaaaatggtaactaattgtaaggagaaaaaatcctatcaatgatgcctagatt 34176851  T
Q  135 accccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaag 233  Q
      ||  ||||||||||||  ||||| |   ||||||| || |||||||||||| || |||||| |||| | |||||| ||||| ||||||||||||||||    
T  34176850 ttccaatgatgaattggggataattcaatcctaatgaaaaatatgattcgattatgaaacgaaagagatgaagatcatatgttaaatgaaggagatgaag 34176751  T
Q  234 aagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaaga 289  Q
    || |||||||||| | ||  || ||| |||||| ||||||||| ||| || |||||    
T  34176750 aattttgatgttcctaaggtgataatagtaactgattgtaagagtaatgaagaaga 34176695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 17606589 - 17606665
Alignment:
Q  166 aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgat 242  Q
    ||||| ||||| |||| |||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  17606589 aatgacaagtaggatttgattcttgaacgaatgagatggatatcacatgttgaatgaaggagatgaacaagtttgat 17606665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 34176705 - 34176631
Alignment:
Q  218 aatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||||  |||||||||||||||||    
T  34176705 aatgaagaagatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaa 34176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 38333818 - 38333913
Alignment:
Q  179 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 274  Q
    |||||||||| |||||||  ||| | |||| ||| |||||| ||| ||||| |||||||| ||||||||||||| |||||| ||||||||||||||    
T  38333818 attcgattctagaacgaaaaagatgaagatgacacgttgaacgaaagagattaagaagttagatgttcttgagatgaaaatagtaactaattgtaa 38333913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 38576726 - 38576840
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    ||||||||||| ||||| ||||||||||||||| ||||| ||| || | ||||| ||||||||||         |||||||||||||||  | ||||||     
T  38576726 taatttacctcaaatgacaagtatgattcgattttggaatgaaggatatggagaacacatgttga---------atgaagaagtttgattatattgagat 38576816  T
Q  254 gaaaatggtaactaattgtaagaa 277  Q
    ||||||||||||| ||||||||||    
T  38576817 gaaaatggtaactgattgtaagaa 38576840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 38576931 - 38577006
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataa 104  Q
    ||||||| ||||||||||||||||| || |||||||  |||  ||||||| ||||||||||||||| |||||||||    
T  38576931 agatggaaatcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgattataa 38577006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 25606506 - 25606360
Alignment:
Q  141 tgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagttt 239  Q
    |||||||||| || |||||||||  |||| | ||||| |||||| || ||||||||| |||| | | |||| ||||||||||||  |||||||||| |||    
T  25606506 tgatgaattgagggtaatttacccttaataacaagtaggattcgtttatggaacgaaggagatgtatatcatatgttgaatgaaacagatgaagaatttt 25606407  T
Q  240 gatgttcttgagaggaaaatggtaactaattgtaagaataaagatga 286  Q
    |||||||| |||  ||||||| ||  | | |||||||| ||||||||    
T  25606406 gatgttctggagttgaaaatgatatttgagtgtaagaaaaaagatga 25606360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 2909897 - 2909857
Alignment:
Q  205 agatcacatgttgaatgaaggagatgaagaagtttgatgtt 245  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  2909897 agattacatgttgaatgaaggagatgaagaagtttgatgtt 2909857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 16863537 - 16863461
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||| ||||||||| |||||| ||| | |||||||  |||| ||||||||||||||||||||||| ||||| ||||    
T  16863537 agatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaag 16863461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 13712743 - 13712822
Alignment:
Q  198 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||| |||||| | ||||||||| ||| |||| |||||||||||||||||| ||| | ||||||||||| || |||||||    
T  13712743 gagatggagattagatgttgaataaagaagataaagaagtttgatgttcttaagatggaaatggtaactgatagtaagaa 13712822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 35371192 - 35371121
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatt 100  Q
    ||||||| |||||||||| ||||||||  |  |||| ||||| ||||||||| |||||||||||||||||||    
T  35371192 agatggaaatcacatgttaaatgaaggtaacaaagaagtttgatgttcttgatatgaaaatggtaaatgatt 35371121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 35370468 - 35370403
Alignment:
Q  40 acatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||||||||||||||| | ||||| ||||| | |||||||||| |||||||||| ||||| ||||    
T  35370468 acatgttgaatgaaggagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaag 35370403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 35373781 - 35373664
Alignment:
Q  36 gatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat----ggtaaatgattataaggaaaaaactctatccgtggggcctac 131  Q
    ||||||||||||||||||||  | ||||| |||||  |||||||||||||||||    ||||| ||||| |||  |||||||| |||| |||  ||||||    
T  35373781 gatcacatgttgaatgaaggtaaagaagaagtttgacgttcttgagatgaaaataaatggtaattgattgtaaa-aaaaaactttatcggtgacgcctac 35373683  T
Q  132 attaccccttgatgaattg 150  Q
    ||||| |||| ||||||||    
T  35373682 attactccttaatgaattg 35373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 35373781 - 35373728
Alignment:
Q  206 gatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaat 259  Q
    ||||||||||||||||||||  | |||||||||||| |||||||||| ||||||    
T  35373781 gatcacatgttgaatgaaggtaaagaagaagtttgacgttcttgagatgaaaat 35373728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 28282731 - 28282667
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 93  Q
    ||||||||||||||| |||||||||| | || |||| ||||| |||| | |||||||||||||||    
T  28282731 agatggagatcacatattgaatgaagcagataaagaagtttgatgttatggagatgaaaatggta 28282667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 35371193 - 35371117
Alignment:
Q  198 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 274  Q
    |||| ||| |||||||||| ||||||||  |  |||||||||||||||||||| | ||||||||||| | |||||||    
T  35371193 gagatggaaatcacatgttaaatgaaggtaacaaagaagtttgatgttcttgatatgaaaatggtaaatgattgtaa 35371117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 13784507 - 13784444
Alignment:
Q  172 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaa 235  Q
    ||||| ||||||||||| |||||||||| |   | |||| ||||||||||||||||||||||||    
T  13784507 aagtaggattcgattcttgaacgaatgaaatatatatcatatgttgaatgaaggagatgaagaa 13784444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 40374123 - 40374184
Alignment:
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||||||||||||||||   || | |||| |||||||||||| ||| |||||||||||||||||    
T  40374123 atgaagaagtttgatgtt---gatatgaaagtggtaactaattttaataataaagatgaagaaaa 40374184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 281
Target Start/End: Original strand, 13712902 - 13712995
Alignment:
Q  188 tggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaa 281  Q
    |||||| || |||| | |||||||||||| |||||||||||| || ||||||||  || || |||  |||||||||||  |||||| |||||||    
T  13712902 tggaaccaaagagatgtagatcacatgttaaatgaaggagataaaaaagtttgaaatttttaagataaaaatggtaaccgattgtaggaataaa 13712995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 2248931 - 2248995
Alignment:
Q  30 gatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||||||| |||||||| ||| ||| | ||||||| ||||  |||| ||||||||||||||||||    
T  2248931 gatggagaccacatgttcaattaagaagatgaagaagtttaatgtttttgagatgaaaatggtaa 2248995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 2243248 - 2243388
Alignment:
Q  137 cccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaag 236  Q
    |||||||||||||||| ||||||||||||||||| |||||  |||||||||| |||||||  ||| |||||||||||||||||||||||| |||||||||    
T  2243248 cccttgatgaattggggtaatttacctctaatgacaagtaaaattcgattctagaacgaagaagatggagatcacatgttgaatgaaggatatgaagaag 2243347  T
Q  237 tttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  2243348 tttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 307
Target Start/End: Complemental strand, 40483931 - 40483655
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||||||||||||| | ||| | ||||||| ||| | ||||||||| || ||  ||| || ||||| || | ||||||| |||||  || ||||    
T  40483931 agatggagatcacatgttgagtaaagaagatgaagaagttggatgttcttgatataaatttgggaattgattgtacg-aaaaaac-ctatcgatgaggcc 40483834  T
Q  129 tacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    ||  ||| | |||||||||||| || ||| ||||| | ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||  |||    
T  40483833 tatgttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatgagtgag 40483734  T
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    |||||||||||||||||| || ||| |||||| |||| || || |||||||||||||||| ||||  || ||||||||||    
T  40483733 atgaagaagtttgatgtt-tttagatgaaaatagtaaatatttttaagaataaagatgaaaaaaatgaattttttctttg 40483655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 973236 - 973114
Alignment:
Q  155 aatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagagg 254  Q
    ||||||| | ||||||||| |||||||| ||| || || |||||||| | |||||||||||||||| |||||||||||||| ||| ||||| ||||||      
T  973236 aatttacttttaatgataaatatgattcaattttgtaatgaatgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagata 973137  T
Q  255 aaaatggtaactaattgtaagaa 277  Q
    |||||| ||||||||||||||||    
T  973136 aaaatgataactaattgtaagaa 973114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 2243310 - 2243425
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag--gaaaa---aactctatccgtg 123  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||| ||||  |||||   ||||||||  |||    
T  2243310 agatggagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaagaaaaaacaactctataggtg 2243409  T
Q  124 gggcctacattacccc 139  Q
     |||||||||||||||    
T  2243410 aggcctacattacccc 2243425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 22780174 - 22780431
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacat 133  Q
    ||||||||||||||||||| | | ||||| | ||||| |||| |||| || |||||||||| ||||| |||  ||||||| ||| |  ||  || | |||    
T  22780174 gagatcacatgttgaatgacgtagatgaaaaagtttgatgttattgaaataaaaatggtaactgattgtaat-aaaaaac-ctaccaatgaagcatgcat 22780271  T
Q  134 taccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaa 232  Q
    |||||   |||||||||| | ||||||| | ||||||| || ||||||| ||||||  |||||| | || | |||||||||||||||||||||| |||||    
T  22780272 tacccaacgatgaattggaggtaatttatccctaatgacaactatgatttgattctaaaacgaaagggatgaagatcacatgttgaatgaaggatatgaa 22780371  T
Q  233 gaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    |||||||  |||| |||||| ||||||||| ||| |||| || | ||||||| |||||||    
T  22780372 gaagtttattgtttttgagatgaaaatggtgactcattgaaatagtaaagattaagaaaa 22780431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 39808191 - 39808334
Alignment:
Q  164 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 263  Q
    ||||||| |||| |||||||||||| ||| ||| ||||   |||||| ||||| ||||||||||||||| |||||||||| |||| ||  ||||||| ||    
T  39808191 ctaatgacaagtgtgattcgattctagaatgaaagagacatagatcatatgttaaatgaaggagatgaaaaagtttgatggtcttaaggtgaaaatgata 39808290  T
Q  264 actaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    |||  || |||||||||| ||||| |||||| ||||||||||||    
T  39808291 acttgttttaagaataaatatgaataaaagagaatttttctttg 39808334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 307
Target Start/End: Original strand, 17736852 - 17737000
Alignment:
Q  158 ttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaa 257  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||||| | || |||||||| |||| || | ||||| |||||| ||||| |||  |||    
T  17736852 ttacctctaatgacaagtatgattctattgtagaacgaatgagaaggaaaccatatgttgaaggaagaaggtaaagaaatttgatattcttaagataaaa 17736951  T
Q  258 atggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    |||||||   |||||||| ||||||||||| |||| || |||||||||||    
T  17736952 atggtaatcgattgtaag-ataaagatgaaaaaaataagatttttctttg 17737000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 17740018 - 17739907
Alignment:
Q  129 tacattaccccttgatgaattgggttaattt-acctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    |||||||||||||||||||||| || || || | | ||||| ||||||| ||||||||||||||||||| |||| | | |||||||||| ||||||| ||    
T  17740018 tacattaccccttgatgaattgagtgaaattcatccctaataataagtaggattcgattctggaacgaaggagatgaaaatcacatgttaaatgaagaag 17739919  T
Q  228 atgaagaagttt 239  Q
    ||||||||||||    
T  17739918 atgaagaagttt 17739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 277
Target Start/End: Original strand, 17736713 - 17736826
Alignment:
Q  164 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 263  Q
    ||||||| ||||| ||||||||||| |||||||  |||  ||||||||||||||| ||||| |||||||||||||| || || |||||| ||||||||||    
T  17736713 ctaatgacaagtacgattcgattctagaacgaagaagatagagatcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggta 17736812  T
Q  264 actaattgtaagaa 277  Q
    | |  |||||||||    
T  17736813 attggttgtaagaa 17736826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 287
Target Start/End: Complemental strand, 41264503 - 41264366
Alignment:
Q  151 ggttaatttacctctaatgataagtatgattcgattctgg-aacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttg 249  Q
    |||||||||||||||||| | || |||||||||||| ||  |||||| |||| | |||||||||||||||||||  | ||||| |||||| |||||||||    
T  41264503 ggttaatttacctctaataacaattatgattcgattatgataacgaaagagatgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttg 41264404  T
Q  250 agaggaaaatggtaactaattgtaagaataaagatgaa 287  Q
    ||| |||||||  |||| ||| | | ||||||||||||    
T  41264403 agatgaaaatgacaactcattatcataataaagatgaa 41264366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 7215417 - 7215529
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    |||||||| |||||| | || |||||| || |||||||||||| |||| | |||||||||||||||||||| | ||||| |||||| |||||||||| |     
T  7215417 taatttacatctaataacaactatgatgcggttctggaacgaaagagatgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatat 7215516  T
Q  254 gaaaatggtaact 266  Q
    |||||| ||||||    
T  7215517 gaaaatagtaact 7215529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 22780339 - 22780401
Alignment:
Q  30 gatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggt 92  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  22780339 gatgaagatcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatggt 22780401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 972883 - 972802
Alignment:
Q  226 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| ||| ||||  || ||||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaattttttctttg 972802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 7215224 - 7215368
Alignment:
Q  133 ttaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 231  Q
    ||||| |||| |||||| ||| |||||||||  ||||||||| |||||||| ||| | ||| |||  ||| ||||||||||| || ||||||| |||  |    
T  7215224 ttacctcttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaatgaaaaagatggagatcacatattcaatgaagaagaa-a 7215322  T
Q  232 agaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    ||||||||||||||||||||| ||||||||||  | ||||||||||    
T  7215323 agaagtttgatgttcttgagatgaaaatggtagttgattgtaagaa 7215368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 41264653 - 41264536
Alignment:
Q  156 atttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagagga 255  Q
    |||||||||||||||||| |||||||||||| | |||| ||  | | ||| ||| || ||| |||||| ||||||||||| |||||||||||||| | ||    
T  41264653 atttacctctaatgataaatatgattcgattttagaacaaaaaatatggaaatctcaagttaaatgaaagagatgaagaaatttgatgttcttgatatga 41264554  T
Q  256 aaatggtaactaattgta 273  Q
    |||| |||||| ||||||    
T  41264553 aaattgtaactgattgta 41264536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 2822597 - 2822681
Alignment:
Q  179 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggta 263  Q
    ||||||||||| || |||||||| |||||||||| ||| || ||||||||||||||| ||| ||||| |||| | ||||||||||    
T  2822597 attcgattctgaaatgaatgagatggagatcacacgttaaaggaaggagatgaagaaatttaatgtttttgaaatgaaaatggta 2822681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 14138620 - 14138544
Alignment:
Q  205 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaa 281  Q
    |||| |||||||||||||| |||||||  ||||||||| ||||| ||| ||||||||||| | ||||||||||||||    
T  14138620 agattacatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaattgattgtaagaataaa 14138544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 40483940 - 40483880
Alignment:
Q  190 gaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttga 250  Q
    |||||||||||| |||||||||||||||| | ||| ||||||||||||| |||||||||||    
T  40483940 gaacgaatgagatggagatcacatgttgagtaaagaagatgaagaagttggatgttcttga 40483880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 37077707 - 37077641
Alignment:
Q  225 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||||||||||||| |||||||||||| ||||||| ||||| ||| |||||||||||||| ||||||    
T  37077707 gagatgaagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaagatggagaaaa 37077641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 972959 - 972874
Alignment:
Q  205 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaa 290  Q
    |||| ||||||| |||||| ||||||||||| |||||| |||||| || |||||||| |||| |||  || |||||||||||||||    
T  972959 agataacatgttaaatgaaagagatgaagaaatttgattttcttgtgatgaaaatggcaactgatttcaaaaataaagatgaagaa 972874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 7982214 - 7982327
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaag-aagtttgatgttcttgagaggaaaatggta 263  Q
    ||||||||| ||| |||| |||||| || ||| ||||  || ||||||||||||||||||||||||||| || ||  ||||| ||||||  |||||| ||    
T  7982214 taatgataaatattattcaattctgaaatgaaggagatagaaatcacatgttgaatgaaggagatgaagaaacttaaatgtttttgagataaaaatgata 7982313  T
Q  264 actaattgtaagaa 277  Q
    ||||||||| ||||    
T  7982314 actaattgtgagaa 7982327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 37077836 - 37077763
Alignment:
Q  204 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    ||||||||||||||||||||  | || ||||| ||||||||| |||||| ||||||| ||||| ||||||||||    
T  37077836 gagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 37077763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 5205469 - 5205585
Alignment:
Q  137 cccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaa 235  Q
    ||||||||||||||||  || ||||||  |||||| ||  ||||||||||| |  ||||||  ||| |||||||||||||| ||| |||||||| || ||    
T  5205469 cccttgatgaattgggggtattttacccttaatgacaatcatgattcgattataaaacgaaatagatggagatcacatgtttaataaaggagataaaaaa 5205568  T
Q  236 gtttgatgttcttgaga 252  Q
    |||||||||| ||||||    
T  5205569 gtttgatgtttttgaga 5205585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 17736748 - 17736856
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||| ||||||||||||||| ||||| | ||||||| ||||  | || |||||||||||||||||| || || |||| |||||| |||||| ||| || |    
T  17736748 agatagagatcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggtaattggttgtaagaaaaaaattctatcagtgaggtc 17736847  T
Q  129 tacattacc 137  Q
    || ||||||    
T  17736848 tatattacc 17736856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 39730312 - 39730363
Alignment:
Q  211 catgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggt 262  Q
    |||||| |||||| |||||||| ||||||||||||||||||| |||||||||    
T  39730312 catgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaatggt 39730363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 26105266 - 26105383
Alignment:
Q  132 attaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg 230  Q
    |||||||||||||||||| ||| ||||||| |  |||||| ||||  ||||| ||||| ||||||| |||| |  ||||| ||||| || |||| |||||    
T  26105266 attaccccttgatgaatttggggtaatttatccataatgacaagtgggattcaattcttgaacgaa-gagatgaggatcatatgttcaacgaagaagatg 26105364  T
Q  231 aagaagtttgatgttcttg 249  Q
    ||||||||||| |||||||    
T  26105365 aagaagtttgacgttcttg 26105383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 7113616 - 7113669
Alignment:
Q  207 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatg 260  Q
    |||||| |||||||||| ||||||||||||||| || ||||||||| |||||||    
T  7113616 atcacacgttgaatgaatgagatgaagaagtttaatattcttgagatgaaaatg 7113669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 7215462 - 7215527
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    ||||| |||||||||||||||||||| ||||||| | ||||  ||||||||| |||||||| ||||    
T  7215462 agatgaagatcacatgttgaatgaagaatatgaaaaagtttaatgttcttgatatgaaaatagtaa 7215527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 26105493 - 26105538
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttctt 248  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||    
T  26105493 ggagatcacatgtgaaatgaaggagatggagaagtttgatgttctt 26105538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 41264454 - 41264393
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatg 90  Q
    ||||| |||||||||||||||||||  ||||||| | ||||  |||||||||||||||||||    
T  41264454 agatgaagatcacatgttgaatgaacaatatgaaaaagtttaatgttcttgagatgaaaatg 41264393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 7982382 - 7982459
Alignment:
Q  207 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagat 284  Q
    |||||||||| || ||| |||  |||||| |||||||||||  ||| ||||||||||||| ||| ||| |||||||||    
T  7982382 atcacatgttaaaagaaagagtcgaagaaatttgatgttctcaagatgaaaatggtaactgattttaacaataaagat 7982459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 7215291 - 7215354
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 93  Q
    ||||||||||||||| || ||||||| | |  |||| ||||| ||||||||||||||||||||||    
T  7215291 agatggagatcacatattcaatgaagaagaa-aagaagtttgatgttcttgagatgaaaatggta 7215354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 14138626 - 14138550
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||| |||| |||||||||||||| || ||||  | ||||| | ||||| ||||||||||||||| ||||| ||||    
T  14138626 agatgaagattacatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaattgattgtaag 14138550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 37077836 - 37077760
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaa 110  Q
    ||||||||||||||||||||  | || ||||  |||| |||| |||||||||||||| ||| ||||| |||| ||||    
T  37077836 gagatcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 37077760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 74 - 313
Target Start/End: Original strand, 27651379 - 27651616
Alignment:
Q  74 ttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaa-tttacctctaatgata 172  Q
    ||||||||||||||||| ||| ||||| |||| ||||||| ||||| ||| || ||||||||||  |||||||||||||   | |||||| || |||| |    
T  27651379 ttcttgagatgaaaatgataattgattgtaag-aaaaaaccctatcggtgaggtctacattaccttttgatgaattggggggagtttaccccttatgaaa 27651477  T
Q  173 agtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgt 272  Q
    |||||||||| ||||| || || | |||| ||| |||||||||||||||||||||||| ||  ||||||||||||||||| ||||||||| ||| |||||    
T  27651478 agtatgattcaattctagaccggaggagatggatatcacatgttgaatgaaggagatg-agttgtttgatgttcttgagatgaaaatggttact-attgt 27651575  T
Q  273 aagaataaagatgaagaaaagaaaatttttctttgctaggg 313  Q
    || |||||||||||||||||   |||||||||||| |||||    
T  27651576 aaaaataaagatgaagaaaaatgaatttttctttgataggg 27651616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 23944231 - 23944079
Alignment:
Q  125 ggcctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 223  Q
    ||||||||||| ||||||||||||| ||| | ||| ||| || ||||||||||||||||||||||||||  || |||| ||| |||||||||||||||||    
T  23944231 ggcctacattatcccttgatgaatttgggatgatt-acccctgatgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaa 23944133  T
Q  224 ggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
     |||| ||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  23944132 agagaagaagaagtttgatgttcttaagatgaaaatggcaactaattgtaagaa 23944079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 274
Target Start/End: Complemental strand, 34891612 - 34891371
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggccta 130  Q
    |||||||||||||||||||||||||| |||||||  |||| |||||||||||| |||||| ||| | ||  |||| |||||||  |||| ||| | ||||    
T  34891612 atggagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaag-aaaaaaccatatcggtgag-ccta 34891515  T
Q  131 cattaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg 230  Q
     |||   |||||||||| |||| ||||||||| || |||| || ||  ||||||||  |||| ||| ||||   |||||||||||| ||||||| ||||     
T  34891514 tattcttccttgatgaactggggtaatttacccctcatgacaaatacaattcgatttgggaatgaaagagatctagatcacatgttaaatgaagaagata 34891415  T
Q  231 aagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 274  Q
    |||||||||||||||||| | | ||||||| |||  ||||||||    
T  34891414 aagaagtttgatgttcttaatatgaaaatgataatgaattgtaa 34891371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 34891610 - 34891536
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||||||| |||||||    
T  34891610 ggagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaa 34891536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 32138854 - 32138958
Alignment:
Q  173 agtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgt 272  Q
    ||||||||||| |||| |||||||  ||| |||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||| | ||| |    
T  32138854 agtatgattcgcttctagaacgaagaagatggagattacatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgatttt 32138953  T
Q  273 aagaa 277  Q
    |||||    
T  32138954 aagaa 32138958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 32138880 - 32139024
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag-gaaaaaactctatccgtggggc 127  Q
    |||||||||| |||||||||| |||||| |||||||  |||| ||||||| ||||||||||||||| ||||| ||||  |||||||   |  |||| | |    
T  32138880 agatggagattacatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaaaaaccaaaatcgtgagac 32138979  T
Q  128 ctacattaccccttgatgaattggg-ttaatttacctctaatgat 171  Q
    ||||||||||| ||||||||| |||  ||||||||| ||||||||    
T  32138980 ctacattaccctttgatgaatcgggagtaatttacccctaatgat 32139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 32962311 - 32962434
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttac-ctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    ||||||||||||||||||||||||| | |||||||  || ||||||||| |||||||||||| || ||| ||  | | | |||||| ||||||||| |||    
T  32962311 cctacattaccccttgatgaattggaggtaatttattctataatgataaatatgattcgattttgaaacaaaaaatatgtagatcatatgttgaataaag 32962410  T
Q  225 gagatgaagaagtttgatgttctt 248  Q
    |||||||| ||||||||| |||||    
T  32962411 gagatgaaaaagtttgattttctt 32962434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 33192336 - 33192414
Alignment:
Q  206 gatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagat 284  Q
    |||||| ||||||||||| ||||| ||||| ||| || ||||||||| |||||||||||||| |||||| |||||||||    
T  33192336 gatcacttgttgaatgaaagagataaagaaatttaatattcttgagaagaaaatggtaactacttgtaaaaataaagat 33192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 23944157 - 23944037
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||| ||||||||||||||||| || | ||||| ||||| ||||||| |||||||||||| || | ||| ||| |||||||||  |   ||| | ||    
T  23944157 agatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatggcaactaattgtaa-gaaaaaacttaaatggtgagacc 23944059  T
Q  129 tacattaccccttgatgaattg 150  Q
    ||||||||||||||||||||||    
T  23944058 tacattaccccttgatgaattg 23944037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 31152823 - 31152919
Alignment:
Q  128 ctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 223  Q
    |||||||| | ||||||||||||||  |||||||||| |||| | ||||| ||||||||| || |||||| |||| ||||||||||| |||||||||    
T  31152823 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggagatcacattttgaatgaa 31152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 4674966 - 4674895
Alignment:
Q  222 aaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaag 293  Q
    |||||||| || ||||||||| ||||||||| |||||||||||||||||  || ||||||||| ||||||||    
T  4674966 aaggagataaataagtttgattttcttgagatgaaaatggtaactaatttcaaaaataaagataaagaaaag 4674895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 27651504 - 27651566
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggt 92  Q
    ||||||| |||||||||||||||||||| ||| || |||||| |||||||||||||||||||||    
T  27651504 agatggatatcacatgttgaatgaaggagatg-agttgtttgatgttcttgagatgaaaatggt 27651566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 277
Target Start/End: Original strand, 31171384 - 31171535
Alignment:
Q  128 ctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 226  Q
    |||||||| | ||||||||||| ||| |||||||||| |||| | ||||| ||||||||| || |||||| |||| ||| ||||||| |||||||||  |    
T  31171384 ctacattatcacttgatgaattgggggtaatttacctataataacaagtaggattcgattatgaaacgaaagagatggaaatcacattttgaatgaaaca 31171483  T
Q  227 gatgaagaagtttgatg-ttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||| ||||| |||| | ||||  ||| ||||||||||  |||||| |||||    
T  31171484 gatgtagaagattgaagtttctaaagatgaaaatggtatttaattgcaagaa 31171535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 42012926 - 42012804
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    |||||||| ||||||||||| || ||||  ||||| |||||||  | | |||||||||||||||||| ||  ||||||| |||||||||||||||| ||     
T  42012926 taatttacttctaatgataaataagatttaattcttgaacgaagtaaatggagatcacatgttgaat-aaatagatgaaaaagtttgatgttcttgtgat 42012828  T
Q  254 gaaaatggtaactaattgtaagaa 277  Q
     ||| |||||||| ||| ||||||    
T  42012827 aaaagtggtaactgattctaagaa 42012804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 3191567 - 3191620
Alignment:
Q  205 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaa 258  Q
    |||||||||||||||| |||||||||||||| ||||||||| |||||| |||||    
T  3191567 agatcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaa 3191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 33362369 - 33362454
Alignment:
Q  162 ctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttct 247  Q
    |||||||| ||| |||||||||||| | |||| || |||  | | ||||||||||||||||||||||| || ||||||||||||||    
T  33362369 ctctaatggtaaatatgattcgattttagaacaaaagagttgtaaatcacatgttgaatgaaggagattaaaaagtttgatgttct 33362454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 292
Target Start/End: Complemental strand, 43208823 - 43208734
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    |||||| ||| |||||| |||||| |||||| | |||||| ||||| | |  |||||||||| | |||||||||||||||||||||||||    
T  43208823 ggagattacacgttgaacgaaggaaatgaaggaatttgatattcttaaaataaaaatggtaattgattgtaagaataaagatgaagaaaa 43208734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 44755065 - 44754928
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||| ||||||||||||| | |  |||||||| ||||| |||||    |||||||| |||| | || |||| | |||||||||||||||||||      
T  44755065 cctacattatcccttgatgaattcgaggcaatttacccctaataataagccgaattcgattatggatcaaaggagatgaagatcacatgttgaatgaaat 44754966  T
Q  226 agatgaagaagtttgatgttcttgagaggaaaatggta 263  Q
    | | |||||||||||||||||| || | ||||||||||    
T  44754965 aaaggaagaagtttgatgttctagaaatgaaaatggta 44754928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 270
Target Start/End: Original strand, 757877 - 758007
Alignment:
Q  140 ttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 238  Q
    |||||||||| ||| |||||||| | |||| ||||||| ||||| ||| | ||| ||| |||| | ||||||||||||||||||||||||| || || ||    
T  757877 ttgatgaatttgggataatttacat-taataataagtaggattcaattatagaatgaaggagatgaagatcacatgttgaatgaaggagataaataaatt 757975  T
Q  239 tgatgttcttgagaggaaaatggtaactaatt 270  Q
    | |  || |||||| ||||||| |||||||||    
T  757976 taagatttttgagatgaaaatgataactaatt 758007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 260
Target Start/End: Original strand, 22593510 - 22593624
Alignment:
Q  143 atgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgat 242  Q
    ||||||||||  |||||| | ||||||| ||  | ||||||||| | ||||||| ||||  || |||||||||||||||||  ||||   ||||||||||    
T  22593510 atgaattggggcaatttatccctaatgacaaaaacgattcgattttagaacgaaggagatagatatcacatgttgaatgaaatagat---gaagtttgat 22593606  T
Q  243 gttcttgagaggaaaatg 260  Q
    |||||||||| |||||||    
T  22593607 gttcttgagatgaaaatg 22593624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 8354394 - 8354444
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaa 87  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||||||||    
T  8354394 atcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaa 8354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 8354394 - 8354444
Alignment:
Q  207 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaa 257  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||| ||||    
T  8354394 atcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaa 8354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 29152350 - 29152399
Alignment:
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||||||||||| |||||| |||||| |||||| ||||||||||    
T  29152350 atgaagaagtttgatgttattgagatgaaaatagtaactgattgtaagaa 29152399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 8900670 - 8900722
Alignment:
Q  225 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||||||||| |||||||||||  |||||||||| | ||||||||||    
T  8900670 gagatgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaa 8900722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 277
Target Start/End: Original strand, 8900673 - 8900892
Alignment:
Q  58 atgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaat 157  Q
    ||||||| |||||||||||||||||| |||||||||| | ||| ||| ||||||||   |    ||  |||||||||| || ||||||||||||| ||||    
T  8900673 atgaagaagtttgttgttcttgagataaaaatggtaatttattgtaa-gaaaaaacaaaaatgttgaagcctacattatccattgatgaattggggtaat 8900771  T
Q  158 ttacctctaatgataagtatgattcgattctggaacgaatgagaa-ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaa 256  Q
    ||| | ||||| | |||||  |||||||| || ||| ||  | || | ||||||||||||| || |   |||||||||| ||| ||||||| |||| |||    
T  8900772 ttatccctaataacaagtagaattcgattatgaaacaaaaaaaaatgtagatcacatgttgtataagacagatgaagaaatttaatgttctagagatgaa 8900871  T
Q  257 aatggtaactaattgtaagaa 277  Q
    ||| |||  | ||||||||||    
T  8900872 aatagtatttgattgtaagaa 8900892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 29152493 - 29152587
Alignment:
Q  210 acatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    ||||||||||||||| ||||||| || ||| ||||| ||||||  ||||| | | ||||||   |||||||||||||||||||| | |||||||||||    
T  29152493 acatgttgaatgaagtagatgaaaaa-tttaatgtttttgagataaaaatcgcagctaattc--agaataaagatgaagaaaaggagatttttctttg 29152587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 3191567 - 3191620
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaa 88  Q
    |||||||||||||||| ||||| |||||||  |||| |||| ||||||||||||    
T  3191567 agatcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaa 3191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 32988567 - 32988620
Alignment:
Q  254 gaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    ||||||| || || ||||||||||||||||||||||||| |  |||||||||||    
T  32988567 gaaaatgatagctgattgtaagaataaagatgaagaaaatatgatttttctttg 32988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 31152738 - 31152790
Alignment:
Q  212 atgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 264  Q
    |||||||||||| || ||||||||| |||||||| || ||| |||||||||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaa 31152790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 42012775 - 42012670
Alignment:
Q  138 ccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagt 237  Q
    ||||||| ||||||| ||||||| | || |||| |  |||||||||||| |||||||||  ||| | | ||||||| || ||||||  |||| |||||||    
T  42012775 ccttgattaattggggtaatttatccctcatgacatatatgattcgattttggaacgaaaaagatgtaaatcacatcttaaatgaa--agattaagaagt 42012678  T
Q  238 ttgatgtt 245  Q
    ||||||||    
T  42012677 ttgatgtt 42012670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 44754992 - 44754928
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggta 93  Q
    ||||| |||||||||||||||||||  | | ||||| ||||| |||||| || ||||||||||||    
T  44754992 agatgaagatcacatgttgaatgaaataaaggaagaagtttgatgttctagaaatgaaaatggta 44754928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 34601435 - 34601710
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||| |||||||||||||| ||||| |||| || ||||| ||||||| |||| ||| | |||| ||||| || |||||||||  |||| ||| | ||    
T  34601435 agatggaaatcacatgttgaataaaggagatgaggaagtttgatgttcttaagataaaagttgtaattgattgta-ggaaaaaaccttatcagtgagacc 34601533  T
Q  129 tacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    ||||| |||||||||| |||| | | ||||||  ||||||||| || |||||||||||| |  || ||| |||| | | |||||||||||||| ||| ||    
T  34601534 tacat-accccttgataaattagaggtaatttgtctctaatgacaactatgattcgattttataaggaaggagatgaatatcacatgttgaat-aagtag 34601631  T
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttcttt 306  Q
    ||||| | |||||||||| |||||| ||||||  |||||||| ||||||||||||||||||||||  | ||||||||||    
T  34601632 atgaaaacgtttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatgagatttttcttt 34601710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 307
Target Start/End: Original strand, 38839582 - 38839761
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||||||||||||||| ||  | ||||| ||  ||||||| ||||| ||||||||| |||||||||  |||   ||||||||||| ||||||||     
T  38839582 cctacattaccccttgatgaactgacggtaattaactcctaatgaaaagtaggattcgattgtggaacgaagaagatcaagatcacatgtcgaatgaaga 38839681  T
Q  226 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    ||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||||  | |||||||||||    
T  38839682 agatgaagaggtttgatgttcttgagatgaaaat--taactaattgtaagaataaagatgaaaaaaattagatttttctttg 38839761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 277
Target Start/End: Complemental strand, 49898030 - 49897873
Alignment:
Q  121 gtggggcctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaa 219  Q
    ||||||| |||||||||| ||| |||||  | | ||||||||||||||||| || |||||||||||||| |||| || |||| |||||||||||||||||    
T  49898030 gtggggcgtacattaccctttgttgaatcagtggtaatttacctctaatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaa 49897931  T
Q  220 tgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    ||||||||| ||||||||| || |||||||||   |||||||||| |||| |||||||    
T  49897930 tgaaggagaagaagaagttcgacgttcttgagctaaaaatggtaattaatcgtaagaa 49897873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 3232273 - 3232131
Alignment:
Q  136 ccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaaga 234  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||| || |||  || |||| |||||| ||||||||||||||| |||||||||    
T  3232273 ccccttgatgaattaggggcaatttacctctaatgataagtatgattcgatactagaagtaaagagatggagattacatgttgaatgaagaagatgaaga 3232174  T
Q  235 agtttgatgttcttga-gaggaaaatggtaactaattgtaagaa 277  Q
    || | ||||||||||| |  ||||||||||||||||||||||||    
T  3232173 ag-tggatgttcttgaggttgaaaatggtaactaattgtaagaa 3232131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 68178 - 67967
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||||||||||| ||||||||| ||||||| ||| | ||||||||| || |||||||||| | ||| |||| ||||||| |||||  || ||||    
T  68178 agatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaag-aaaaaac-ctatcaatgaggcc 68081  T
Q  129 tacattaccccttgatga---attgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    | |||||||   ||||||   | || | ||||||||||||||||| || |||||| ||||| ||||| ||| |||| | ||||||||||| |||||||||    
T  68080 tgcattacctaatgatgatgaaatgtggtaatttacctctaatgacaattatgatccgattttggaatgaaagagatgaagatcacatgtagaatgaagg 67981  T
Q  226 agatgaagaagttt 239  Q
    | ||||||||||||    
T  67980 atatgaagaagttt 67967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 154 - 287
Target Start/End: Complemental strand, 52432786 - 52432654
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    ||||||||| || ||| ||| ||| |||||||| | |||| ||| ||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||     
T  52432786 taatttacc-ctgatggtaaatataattcgattatagaacaaattagatggagatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagat 52432688  T
Q  254 gaaaatggtaactaattgtaagaataaagatgaa 287  Q
    ||||||||||| | ||| ||||||||||||||||    
T  52432687 gaaaatggtaattgattataagaataaagatgaa 52432654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 68208 - 68100
Alignment:
Q  169 gataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaa 268  Q
    ||||| ||| |||||||| |||||||||  ||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |  |||||||||||| |    
T  68208 gataaatatcattcgattttggaacgaaaaagatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactca 68109  T
Q  269 ttgtaagaa 277  Q
    |||||||||    
T  68108 ttgtaagaa 68100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 3367908 - 3367810
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgaga 252  Q
    |||||||| | ||||||||| ||||||   ||||||||||||| |||| ||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  3367908 taatttacttttaatgataaatatgatataattctggaacgaaagagatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgaga 3367810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 5500739 - 5500878
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||||| ||||||||||||  | ||||||| ||||||| ||  |||| ||| ||||||| ||||||| ||| |||||||||||||||||| || |    
T  5500739 cctacattacctcttgatgaattgaagataatttatctctaataatctgtattatttgattctgaaacgaataagatggagatcacatgttgaat-aatg 5500837  T
Q  226 agatgaagaagtttgatgttcttgagaggaaaatggtaact 266  Q
    | |||||||| ||||||||| ||||||  ||||||||||||    
T  5500838 aaatgaagaaatttgatgtttttgagataaaaatggtaact 5500878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 46081048 - 46080974
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| | ||||||||||    
T  46081048 ggagattacatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaa 46080974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 7104387 - 7104295
Alignment:
Q  158 ttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttga 250  Q
    |||| |||||||| |||||||||||||||||| |||||| |||| | | || |||||||||||||||||||||||||| ||| || |||||||    
T  7104387 ttacttctaatgacaagtatgattcgattctgaaacgaaagagatgaatattacatgttgaatgaaggagatgaagaaatttaatattcttga 7104295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 52432742 - 52432666
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||    
T  52432742 agatggagatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataag 52432666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 52432951 - 52432836
Alignment:
Q  162 ctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatgg 261  Q
    ||||||||| || ||||||| |||| || |||||| ||||   | || |||||| |||||||| | |||||||||||||||||| |||||| |||||||     
T  52432951 ctctaatgacaaatatgatttgattatgaaacgaaagagataaaaattacatgtcgaatgaagaaaatgaagaagtttgatgtttttgagaagaaaatga 52432852  T
Q  262 taactaattgtaagaa 277  Q
    ||||||||||||||||    
T  52432851 taactaattgtaagaa 52432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 3232209 - 3231946
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagat-gaaaatggtaaatgattataaggaaaaaactctatccgtggggc 127  Q
    |||||||||| ||||||||||||||| | ||||||| ||  | |||||||||| | ||||||||||| | ||| |||| |||||||  |||| ||| |||    
T  3232209 agatggagattacatgttgaatgaagaagatgaagaagtg-gatgttcttgaggttgaaaatggtaactaattgtaag-aaaaaaca-tatcggtgaggc 3232113  T
Q  128 ctacattaccccttgatgaattgggt-taatttacctctaatga-taagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
     |||| || ||||||| || ||| |  |||||||||  | |||| ||||||  |||| ||| | ||||||| |||  | | ||||||||||||||||| |    
T  3232112 atacactatcccttgacgagttgagagtaatttaccattgatgactaagtagtattcaattatagaacgaaggaggtgaatatcacatgttgaatgaatg 3232013  T
Q  226 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    | ||||||||||||| ||||||||||| |||||| | |||| |||||||  ||||| ||||||||||    
T  3232012 acatgaagaagtttgttgttcttgagatgaaaatagcaactgattgtaaagataaacatgaagaaaa 3231946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 46081054 - 46080969
Alignment:
Q  27 tcagatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 112  Q
    |||| ||||||| ||||||||| ||||||| ||||||| ||||  ||||||||||||||||||||||| ||||| |||| ||||||    
T  46081054 tcaggtggagattacatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaaaa 46080969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 15321156 - 15321029
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 264  Q
    |||||| || ||||||| ||||||| || ||| |||| | |||| ||||||||||||||||| ||||| || ||| ||||| |||||| |||||||  ||    
T  15321156 taatgacaattatgatttgattctgaaatgaaagagatgaagattacatgttgaatgaaggatatgaaaaaatttaatgtttttgagaagaaaatgacaa 15321057  T
Q  265 ctaattgtaagaataaagatgaagaaaa 292  Q
    ||  |||||| ||| |||||||||||||    
T  15321056 ctcgttgtaataattaagatgaagaaaa 15321029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 41148568 - 41148651
Alignment:
Q  137 cccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaat 220  Q
    |||||||||||||||| ||||||| | ||||||| |||||  |||||||||| ||||||| |||| ||| ||||||||||||||    
T  41148568 cccttgatgaattggggtaatttatccctaatgaaaagtagaattcgattctagaacgaaggagatggatatcacatgttgaat 41148651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 2534433 - 2534503
Alignment:
Q  222 aaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    |||||||||||||||||||||||| |||||| |||| |||||| | ||| ||| |||||||||||||||||    
T  2534433 aaggagatgaagaagtttgatgtttttgagatgaaagtggtaaattattttaaaaataaagatgaagaaaa 2534503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 34601366 - 34601484
Alignment:
Q  131 cattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagat 229  Q
    ||||||||||| ||||||||| | |||||||||||| |||| || ||||||| |||  | ||| ||   ||| ||| |||||||||||||| ||||||||    
T  34601366 cattaccccttaatgaattggtggtaatttacctcttatgacaattatgatttgatcatagaatgatgaagatggaaatcacatgttgaataaaggagat 34601465  T
Q  230 gaagaagtttgatgttctt 248  Q
    || ||||||||||||||||    
T  34601466 gaggaagtttgatgttctt 34601484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 44330578 - 44330466
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 264  Q
    |||| ||||||||||||| ||||| |||  |||||||  |||||||||||| |||| | ||| |||||||||| ||||||| |||| | |||||||||||    
T  44330578 taataataagtatgattcaattcttgaataaatgagatagagatcacatgtagaataatggaaatgaagaagtgtgatgtttttgatatgaaaatggtaa 44330479  T
Q  265 ctaattgtaagaa 277  Q
     |  |||||||||    
T  44330478 atggttgtaagaa 44330466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 24874715 - 24874601
Alignment:
Q  164 ctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg-aagaagtttgatgttcttgagaggaaaatggt 262  Q
    ||||||| |||||  |||||||||| ||| |||| |||  ||||||||||||||||| | ||||||| || ||||||||| ||||| | | |||||||||    
T  24874715 ctaatgacaagtagcattcgattctagaatgaataagacagagatcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggt 24874616  T
Q  263 aactaattgtaagaa 277  Q
    || | ||||||||||    
T  24874615 aattgattgtaagaa 24874601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 10775231 - 10775166
Alignment:
Q  212 atgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||| ||| |||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaa 10775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 35957083 - 35956982
Alignment:
Q  180 ttcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaata 279  Q
    ||||||| | |||||||  ||| ||||||||||| || ||| || || ||| | |||||||||||| ||||||  |||||||||| ||||||||||||||    
T  35957083 ttcgatttttgaacgaaatagatggagatcacatattaaataaaagaaatggaaaagtttgatgtttttgagataaaaatggtaattaattgtaagaata 35956984  T
Q  280 aa 281  Q
    ||    
T  35956983 aa 35956982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 10775125 - 10775037
Alignment:
Q  172 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatg 260  Q
    ||||| ||||||||| |||||||||  | | | |||||||||||||||||||  ||| |||||| ||||||||||| |||| |||||||    
T  10775125 aagtaggattcgattatggaacgaagaaaatgaagatcacatgttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatg 10775037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 12145093 - 12145005
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgat 242  Q
    ||||||||||||| ||||||||| |||| |||| | ||  ||  |||| | | ||||||||||||||||| ||||||||||||||||||    
T  12145093 taatttacctctattgataagtaggatttgattttagagtgacagagatgaaaatcacatgttgaatgaatgagatgaagaagtttgat 12145005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 42819524 - 42819472
Alignment:
Q  255 aaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    |||||||||||||||| |||||||||| ||||||||||||  |||||||||||    
T  42819524 aaaatggtaactaattttaagaataaatatgaagaaaagaggatttttctttg 42819472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Complemental strand, 24873867 - 24873768
Alignment:
Q  179 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg-aagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||| ||| |||| |||  ||||||||||||||||| | ||||||| || ||||||||| ||||| | | ||||||||||| | ||||||||||    
T  24873867 attcgattctagaatgaataagacagagatcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggtaattgattgtaagaa 24873768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 5500812 - 5500885
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattata 103  Q
    |||||||||||||||||||||| || || |||||||  |||| |||| ||||||| |||||||||| ||||||||    
T  5500812 agatggagatcacatgttgaat-aatgaaatgaagaaatttgatgtttttgagataaaaatggtaactgattata 5500885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 38839661 - 38839715
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat 89  Q
    ||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||    
T  38839661 agatcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 38839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 42819702 - 42819624
Alignment:
Q  199 agaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||||| |||||||| |||   |||||| |||||| |||||||||||| ||||||| ||| | ||||||||||    
T  42819702 agaaggagatcatatgttgaaagaaaatgatgaataagttttatgttcttgagatgaaaatgataattgattgtaagaa 42819624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 45136757 - 45136827
Alignment:
Q  244 ttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgctagggg 314  Q
    |||||| || ||||||  ||||| |||||||||||||||||||||||||  | ||||||||||| ||||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaatgagatttttctttgatagggg 45136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 3367863 - 3367806
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaa 86  Q
    ||||||||||||||||||||||||| || ||||| |  |||| |||||||||||||||    
T  3367863 agatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgagatgaa 3367806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 10775231 - 10775162
Alignment:
Q  42 atgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 111  Q
    |||||||| ||| || ||||||| ||||| ||||||| ||||||||||||||| ||||| |||| |||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaaa 10775162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 49897951 - 49897886
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||||||||||||||||||||||||||| | ||||| ||| |  ||||||||| | ||||||||||    
T  49897951 agatggagatcacatgttgaatgaaggagaagaagaagttcgacgttcttgagctaaaaatggtaa 49897886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 44330544 - 44330462
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaa 111  Q
    |||| |||||||||||| |||| | ||| ||||||| || || |||| |||| |||||||||||||||| || |||| |||||    
T  44330544 agatagagatcacatgtagaataatggaaatgaagaagtgtgatgtttttgatatgaaaatggtaaatggttgtaagaaaaaa 44330462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 7749085 - 7749024
Alignment:
Q  198 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaat 259  Q
    |||| |||||||||||||| ||  ||| | |||||||| |||||||||||||||| ||||||    
T  7749085 gagatggagatcacatgttaaacaaagaaaatgaagaaatttgatgttcttgagatgaaaat 7749024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 46080910 - 46080822
Alignment:
Q  218 aatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    |||||| ||||||||||| |||||||||||| |||  ||||||||||   ||| | |||||||| ||||||||||  | |||||||||||    
T  46080910 aatgaaagagatgaagaa-tttgatgttcttaagataaaaatggtaatcgattctgagaataaaaatgaagaaaatgagatttttctttg 46080822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 3367794 - 3367746
Alignment:
Q  244 ttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||||||| ||||| | ||||| || ||||||||||||||||||||||    
T  3367794 ttcttgagatgaaaacgataactgatcgtaagaataaagatgaagaaaa 3367746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 7104271 - 7104215
Alignment:
Q  179 attcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaa 235  Q
    ||||||||||| |||||| |||| | | || |||||||| |||||||||||||||||    
T  7104271 attcgattctgaaacgaaagagatgaatattacatgttgcatgaaggagatgaagaa 7104215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 7749084 - 7749024
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat 89  Q
    |||||||||||||||||| ||  ||| | |||||||  |||| ||||||||||||||||||    
T  7749084 agatggagatcacatgttaaacaaagaaaatgaagaaatttgatgttcttgagatgaaaat 7749024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 32047325 - 32047190
Alignment:
Q  130 acattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggaga 228  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||| ||||| |||  ||| | | |||| |||||||||||| ||||    
T  32047325 acattatcccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgaga 32047226  T
Q  229 tgaagaagtttgatgttcttgagaggaaaatggtaa 264  Q
    |||||||||||||||||||||||| |||||||||||    
T  32047225 tgaagaagtttgatgttcttgagatgaaaatggtaa 32047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 32342753 - 32342603
Alignment:
Q  127 cctacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 226  Q
    |||||||| ||| || |||||||||| ||||||| |  ||||||||| ||||||| ||||||||||||||  | |  |||||| ||||||||||||| ||    
T  32342753 cctacattgcccttttatgaattggggtaatttatccttaatgataaatatgatttgattctggaacgaaaaaaatagagatcgcatgttgaatgaatga 32342654  T
Q  227 gatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||| |||||||||||| |||||| ||||||| ||| | ||||||||||    
T  32342653 gatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaagaa 32342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 35 - 292
Target Start/End: Complemental strand, 20068160 - 20067904
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacatt 134  Q
    |||| |||||||||||||| || |||| || ||||| ||||||  | ||||||||||||  ||||| |||| ||||| | ||||   || ||| ||||||    
T  20068160 agatgacatgttgaatgaaagagatgaggaagtttgatgttctctacatgaaaatggtac-tgattgtaag-aaaaagcactatggatgaggcttacatt 20068063  T
Q  135 accccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaag 233  Q
      || |||||||||||  | |||||||||  ||| || ||||| ||||||||| |||||||||||||  | ||||||||||||||| ||||  || ||||    
T  20068062 ttcctttgatgaattgaaggtaatttacccttaaagacaagtaggattcgattatggaacgaatgaggggaagatcacatgttgaaggaagatgaagaag 20067963  T
Q  234 aagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    |||| | ||||| |||||| ||||||| ||||| ||| |||||||||| ||||||||||    
T  20067962 aagtataatgttattgagatgaaaatgataactgattctaagaataaaaatgaagaaaa 20067904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 32047144 - 32047039
Alignment:
Q  127 cctacattaccccttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    ||||||||||| ||||||||||||  | |||||||| |||| ||| || || ||||| |||||||||||||  | ||||||||||||||||||||||||     
T  32047144 cctacattacctcttgatgaattgatggtaatttacttctattgacaaataggattcaattctggaacgaagaaaaaggagatcacatgttgaatgaaga 32047045  T
Q  226 agatga 231  Q
    ||||||    
T  32047044 agatga 32047039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 32342676 - 32342523
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacat 133  Q
    |||||| ||||||||||||| || ||||| | ||||| |||| |||||||||||||| ||| ||||| ||| |||||||||  |   ||| |||||||||    
T  32342676 gagatcgcatgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaa-gaaaaaactaaaatggtgaggcctacat 32342578  T
Q  134 taccccttgatga--attgggttaatttacctctaatgataagtatgattcgatt 186  Q
     | ||||||||||  |||||| ||||||| | ||||||| || ||||||||||||    
T  32342577 catcccttgatgaacattggggtaatttatcgctaatgacaaatatgattcgatt 32342523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 32047247 - 32047186
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatga 98  Q
    |||| |||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||    
T  32047247 atcatatgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaatggtaaatga 32047186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 23577224 - 23577165
Alignment:
Q  207 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaact 266  Q
    |||| ||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||    
T  23577224 atcagatgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaact 23577165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 7556040 - 7556171
Alignment:
Q  131 cattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctgg-aacgaatgagaaggagatcacatgttgaatgaaggaga 228  Q
    ||||| || ||||||||||| || ||||||| | ||||| | || |||||||||||| ||  |||||| || | | ||||||||||||||||||| || |    
T  7556040 cattatccattgatgaattgagggtaatttatccctaataacaactatgattcgattatgataacgaaagataggaagatcacatgttgaatgaatgata 7556139  T
Q  229 tgaagaagtttgatgttcttgagaggaaaatg 260  Q
    |||| || ||| |||||||||||| |||||||    
T  7556140 tgaataaatttaatgttcttgagatgaaaatg 7556171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 20206481 - 20206541
Alignment:
Q  231 aagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaa 291  Q
    ||||||||||||||| |||||| ||||||| ||| | |||||||||||||| | |||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaa 20206541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 22100504 - 22100564
Alignment:
Q  231 aagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaa 291  Q
    ||||||||||||||| |||||| ||||||| ||| | |||||||||||||| | |||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaa 22100564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 26236689 - 26236799
Alignment:
Q  77 ttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggt-taatttacctctaatgataagt 175  Q
    |||||||||||||||||| | |||||||| |||||||| ||||  |  ||| | ||||| ||  |||| |||||||  ||||||||||||||| ||||||    
T  26236689 ttgagatgaaaatggtaactcattataag-aaaaaact-tatcaataaggcatgcattatccaatgataaattgggggtaatttacctctaataataagt 26236786  T
Q  176 atgattcgattct 188  Q
    |||||||||||||    
T  26236787 atgattcgattct 26236799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 7556116 - 7556171
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatg 90  Q
    ||||||||||||||||||| |||||||| |  |||  |||||||||||||||||||    
T  7556116 agatcacatgttgaatgaatgatatgaataaatttaatgttcttgagatgaaaatg 7556171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 23577224 - 23577167
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||| ||||||||||||||| ||| ||| || || |||| ||||||||||||||||||    
T  23577224 atcagatgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaa 23577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 247
Target Start/End: Complemental strand, 25062565 - 25062352
Alignment:
Q  35 agatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacatt 134  Q
    |||| ||| |||||| |||| | ||||||| ||||| | ||||||||||||||| ||||| ||||| |||| |||||||   ||  |||  |||||||||    
T  25062565 agattacaagttgaacgaagaagatgaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacatt 25062466  T
Q  135 accccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaag 233  Q
    |  ||||||||||||| || ||||||||| ||||| | ||||| |||| |||| |||||| || |||| | |||||||||||| ||||||| ||||||||    
T  25062465 attccttgatgaattgagggtaatttacccctaataacaagtaggatttgattatggaacaaaggagatgaagatcacatgtttaatgaagcagatgaag 25062366  T
Q  234 aagtttgatgttct 247  Q
    ||||||||||||||    
T  25062365 aagtttgatgttct 25062352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 128 - 277
Target Start/End: Complemental strand, 22051005 - 22050855
Alignment:
Q  128 ctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagga 226  Q
    ||||| |||||||| ||||||||||  |||||||||  ||||||||| ||||||||||||||| || |||||||| | ||||||||||||||||||||||    
T  22051005 ctacaatacccctttatgaattgggggtaatttacccttaatgataaatatgattcgattctgaaaggaatgagatgaagatcacatgttgaatgaagga 22050906  T
Q  227 gatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||  ||  |||| || |||  |||||| ||||||||||||||||    
T  22050905 gatgaagaaacttattgtttttaagataaaaatgataactaattgtaagaa 22050855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 15131574 - 15131647
Alignment:
Q  204 gagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||  |||||||||||| || |||||||    
T  15131574 gagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaa 15131647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 20512797 - 20512923
Alignment:
Q  175 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 274  Q
    |||||||||||| || |||||| || | |||||| ||||||| ||||||| ||||||||||||||||||||  | ||| |||||||  || | ||| |||    
T  20512797 tatgattcgattatgaaacgaaggatatggagattacatgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatgacaattgattttaa 20512896  T
Q  275 gaataaagatgaagaaaagaaaatttt 301  Q
     |||||||||||||||||  |||||||    
T  20512897 aaataaagatgaagaaaatgaaatttt 20512923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 25062616 - 25062493
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    ||||||||  || |||| ||||||||||| ||||||||  |||  ||||  |||| ||| |||||| |||| ||||||||||||||||| |||||||||     
T  25062616 taatttacaactcatgacaagtatgattcaattctggattgaagaagaaaaagattacaagttgaacgaagaagatgaagaagtttgatattcttgagat 25062517  T
Q  254 gaaaatggtaactaattgtaagaa 277  Q
    ||||| ||||| | ||||||||||    
T  25062516 gaaaacggtaattgattgtaagaa 25062493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 15131574 - 15131639
Alignment:
Q  34 gagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||| |||||||||| ||||    
T  15131574 gagatcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgat 15131639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 22050774 - 22050725
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgaga 252  Q
    |||||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  22050774 ggagatcacatgttaaatgaaggaaatgaagaagtttgatgttgttgaga 22050725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 20512668 - 20512740
Alignment:
Q  205 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||||| ||||||| | ||||||||  || ||||| |||||| ||||| | ||||||||||||||||    
T  20512668 agatcacatgttcaatgaagaatatgaagaaacttaatgtttttgagatgaaaaagataactaattgtaagaa 20512740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 22050775 - 22050719
Alignment:
Q  32 tggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaa 88  Q
    ||||||||||||||| ||||||||| ||||||| ||||| |||| ||||||| ||||    
T  22050775 tggagatcacatgttaaatgaaggaaatgaagaagtttgatgttgttgagattaaaa 22050719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 54000043 - 54000111
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    |||||||||||||||||||| || |  |||||  | |||| ||||||||||||||||||||||| ||||    
T  54000043 atggagatcacatgttgaataaatgtgatgaatttttttgatgttcttgagatgaaaatggtaattgat 54000111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 4115389 - 4115452
Alignment:
Q  211 catgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 274  Q
    ||||||||||||| |||||| |||||||| |||||||| |||  |||||||||| |||| ||||    
T  4115389 catgttgaatgaatgagatggagaagtttcatgttcttaagataaaaatggtaattaatagtaa 4115452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 25234202 - 25234261
Alignment:
Q  207 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaact 266  Q
    ||||||| ||||  |||||| || ||||| |||||||||||||||| |||||||||||||    
T  25234202 atcacatattgacggaaggatattaagaaatttgatgttcttgagatgaaaatggtaact 25234261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 25234202 - 25234264
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    ||||||| ||||  ||||||||| ||||  |||| ||||||||||||||||||||||| ||||    
T  25234202 atcacatattgacggaaggatattaagaaatttgatgttcttgagatgaaaatggtaactgat 25234264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 54000045 - 54000119
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    |||||||||||||||||| || | ||||||    |||||||||||||||| ||||||||||| | || |||||||    
T  54000045 ggagatcacatgttgaataaatgtgatgaatttttttgatgttcttgagatgaaaatggtaattgatagtaagaa 54000119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 44591971 - 44592031
Alignment:
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaag 288  Q
    |||||||||||| ||||| |||||| |||||| ||||||  |||||| ||||| |||||||    
T  44591971 atgaagaagtttaatgtttttgagatgaaaatagtaacttgttgtaataataatgatgaag 44592031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 127 - 277
Target Start/End: Complemental strand, 29969252 - 29969101
Alignment:
Q  127 cctacattaccccttgatgaattg-ggttaatttacctct-aatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    |||||||||||||||||||||||| || ||||||||| || ||||| |||||  |||||||| ||||||||| |||| | | ||||||||||||||||||    
T  29969252 cctacattaccccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacgaaagagatgaatatcacatgttgaatgaag 29969153  T
Q  225 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    | || ||||||||||||||||||||| |  |||||||||||| ||||||||||    
T  29969152 gggaagaagaagtttgatgttcttga-aaaaaaatggtaactgattgtaagaa 29969101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 7405477 - 7405660
Alignment:
Q  121 gtggggcctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaa 219  Q
    ||||||| |||||||||||||||||| |||||  ||||||||| ||||| |||||    | |||||| ||||||||| |||| | |||||||||||||||    
T  7405477 gtggggcatacattaccccttgatgagttggggataatttacccctaatcataag----actcgattatggaacgaacgagatgaagatcacatgttgaa 7405572  T
Q  220 tgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    || |||||||||||| ||||||||| ||||| |  |||||   |||||||| ||||||||||||| ||| |||   ||||||||||||    
T  7405573 tgtaggagatgaagacgtttgatgtgcttgacataaaaataacaactaattttaagaataaagataaagtaaatggaatttttctttg 7405660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 34695904 - 34695802
Alignment:
Q  205 agatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttct 304  Q
    ||||||||||||||||||||||| ||||||| ||||||  | |||| | ||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  34695904 agatcacatgttgaatgaaggaggtgaagaaatttgataattttgaaaagaaaatgataactgattgtaagaataaagatgaagaaaagagaatttttct 34695805  T
Q  305 ttg 307  Q
    |||    
T  34695804 ttg 34695802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 35574610 - 35574712
Alignment:
Q  175 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 274  Q
    |||||||||||| |||||||||  ||| |||||| |||||||||||||| |||||||| || |||||||||||| ||| |||||| ||||||||||||||    
T  35574610 tatgattcgattttggaacgaaaaagatggagatgacatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaa 35574709  T
Q  275 gaa 277  Q
    |||    
T  35574710 gaa 35574712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 305
Target Start/End: Original strand, 37010315 - 37010445
Alignment:
Q  175 tatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaa 274  Q
    |||||||||||| ||||| ||| ||||  ||||||||||||| |||||| || ||||| |||||||||||| |||||| ||||||||||||||||| | |    
T  37010315 tatgattcgattatggaatgaaggagatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatggtaactaattttta 37010414  T
Q  275 gaataaagatgaagaaaagaaaatttttctt 305  Q
     |||||||||||| ||||  || ||||||||    
T  37010415 aaataaagatgaaaaaaatgaattttttctt 37010445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 280
Target Start/End: Original strand, 35574634 - 35574884
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||| |||||||||||||| || ||||| |  |||| ||||||| |||||||||| |||| | ||| ||||  |||||| |||||  || || |    
T  35574634 agatggagatgacatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaag--aaaaaccctatcaatgaggtc 35574731  T
Q  129 tacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    | |||||  | ||||||||||| || ||||||||| ||||||| || |||||||||||| ||||||||| ||||   | |||| ||||| |||||| ||     
T  35574732 tccattattcattgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaacgaaagagattaaaatcatatgttcaatgaaagat 35574831  T
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataa 280  Q
    ||||| ||  || |||||||||||| |||||| ||||||  |||||| |||||    
T  35574832 atgaaaaaaattaatgttcttgagatgaaaatagtaactcgttgtaataataa 35574884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 32166629 - 32166825
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||| |||| ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||| ||| ||||  |||| ||||    |||||  || | |     
T  32166629 agatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaa----ctatcgatgag-ca 32166723  T
Q  129 tacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    ||||||   | |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||| |||| | | |||||||||| ||||||| ||    
T  32166724 tacatttttctttgatgaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacgaaagagatgtaaatcacatgttaaatgaagaag 32166823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 6630524 - 6630628
Alignment:
Q  190 gaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaaga 289  Q
    |||||||||||| ||||||||| |||| |||||||||||||||||| ||| ||| |||| ||| ||||||||||| | |||  ||||||||||| |||||    
T  6630524 gaacgaatgagatggagatcacttgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgatttgaagaataaagacgaaga 6630623  T
Q  290 aaaga 294  Q
    |||||    
T  6630624 aaaga 6630628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 7590280 - 7590402
Alignment:
Q  170 ataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaat 269  Q
    ||||||| ||| |||||||| ||||||  ||| | ||| |||||  ||||||||| |||||||||| |||||||||||||| | |||| |||||||  ||    
T  7590280 ataagtaagatacgattctgaaacgaagaagatgaagaccacatagtgaatgaagaagatgaagaaatttgatgttcttgaaatgaaattggtaaccgat 7590379  T
Q  270 tgtaagaataaagatgaagaaaa 292  Q
    |||||||||||||| ||||||||    
T  7590380 tgtaagaataaagacgaagaaaa 7590402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 32166593 - 32166707
Alignment:
Q  163 tctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggt 262  Q
    |||||||||||  | ||||| |||||  |||||| |||| | |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |    
T  32166593 tctaatgataaaaaagattcaattctaaaacgaaagagatgaagattacatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgat 32166692  T
Q  263 aactaattgtaagaa 277  Q
    || | || |||||||    
T  32166693 aattgatagtaagaa 32166707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 12736136 - 12736059
Alignment:
Q  198 gagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaag 275  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||| || ||| | ||||||||||||||||||||    
T  12736136 gagatggacatcacatgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatggtaactaattgtaag 12736059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 29093644 - 29093581
Alignment:
Q  172 aagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaa 235  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  29093644 aagtatgatttgattatggaacgaaagagatggagatcacatgttgaatgaaggagatgaagaa 29093581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 6630308 - 6630429
Alignment:
Q  132 attaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg 230  Q
    ||||||| ||||||||||| |  ||||||||| ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||||||||||||  |||||    
T  6630308 attaccctttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatgttgaatgaaaaagatg 6630407  T
Q  231 aagaagtttgatgttcttgaga 252  Q
    || |||||||||||||||||||    
T  6630408 aaaaagtttgatgttcttgaga 6630429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 6803868 - 6803989
Alignment:
Q  132 attaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg 230  Q
    ||||||| |||||||||||||  ||||||||| ||||||| ||||| |||| |||| || || ||| |||| ||| | |||||| ||||||||  ||||     
T  6803868 attaccctttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttgaaatgaaggagatggataacacatggtgaatgaaaaagata 6803967  T
Q  231 aagaagtttgatgttcttgaga 252  Q
    ||||||||||||||| ||||||    
T  6803968 aagaagtttgatgtttttgaga 6803989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 12736135 - 12736052
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaa 112  Q
    ||||||| ||||||||||||| |||||| ||||||| ||||| |||| || ||||| ||||||||| | ||| |||||||||||    
T  12736135 agatggacatcacatgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatggtaactaattgtaaggaaaaaa 12736052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 30547336 - 30547409
Alignment:
Q  219 atgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    |||||||||||||||||||||| |||| ||||||  ||||| |||| || ||| ||||||||| ||||||||||    
T  30547336 atgaaggagatgaagaagtttgttgtttttgagataaaaatagtaaatatttggaagaataaaaatgaagaaaa 30547409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 39280984 - 39280919
Alignment:
Q  249 gagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgctagggg 314  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||   ||||||||||| ||||||    
T  39280984 gagatgaaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgatagggg 39280919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 37010339 - 37010404
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    |||| ||||||||||||| |||||| || ||||| | ||||| |||| ||||||||||||||||||    
T  37010339 agatagagatcacatgttaaatgaaagaaatgaataagtttgatgtttttgagatgaaaatggtaa 37010404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 29969170 - 29969091
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactcta 117  Q
    |||||||||||||||||||  | ||||| ||||| ||||||||| |  |||||||||| ||||| |||| |||||||||||    
T  29969170 atcacatgttgaatgaaggggaagaagaagtttgatgttcttga-aaaaaaatggtaactgattgtaagaaaaaaactcta 29969091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 6630533 - 6630604
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgatt 100  Q
    ||||||||||||| |||| ||||||||| |||||||  |||  || |||| ||||||||||||||| |||||    
T  6630533 agatggagatcacttgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgatt 6630604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 29093617 - 29093582
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaaga 64  Q
    |||||||||||||||||||||||||||| |||||||    
T  29093617 agatggagatcacatgttgaatgaaggagatgaaga 29093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 31475111 - 31475052
Alignment:
Q  207 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaact 266  Q
    |||||||  ||||| ||| |||||||||||||||||||||||||||  ||||| ||||||    
T  31475111 atcacattgtgaatcaagaagatgaagaagtttgatgttcttgagataaaaatagtaact 31475052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 33897807 - 33897753
Alignment:
Q  210 acatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 264  Q
    ||||||||||||||||| || ||||| ||||||||| |||||| |||||| ||||    
T  33897807 acatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaa 33897753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 7405552 - 7405612
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaat 89  Q
    ||||| ||||||||||||||||| |||| ||||||| ||||| ||| ||||| || |||||    
T  7405552 agatgaagatcacatgttgaatgtaggagatgaagacgtttgatgtgcttgacataaaaat 7405612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 26086876 - 26086801
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatg 230  Q
    ||||||||||||||||| || || ||||| ||| ||||||||| ||||   |||||| ||||||||| |||||||||    
T  26086876 taatttacctctaatgacaa-taggattcaattatggaacgaaagagacaaagatcatatgttgaataaaggagatg 26086801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 33897816 - 33897748
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgat 99  Q
    |||||| | ||||||||||||||||| || ||||  |||| |||| ||||||||||||| |||| ||||    
T  33897816 atggaggttacatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaattgat 33897748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 39341347 - 39341202
Alignment:
Q  133 ttaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 231  Q
    |||||| |||||||||| ||| |||||||||||||||||||| || ||||| ||| | |||||||  | | ||||||| |||||||||||||||||||||    
T  39341347 ttaccctttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttgaatgaaggagatga 39341248  T
Q  232 agaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    | ||||||||| ||||| ||| ||||||||||||| || |||||||    
T  39341247 aaaagtttgatattcttaagatgaaaatggtaactcatagtaagaa 39341202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 2563115 - 2562969
Alignment:
Q  85 aaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattaccccttgatgaattgggttaatttacctctaatgataagtatgattcga 184  Q
    |||||| ||| || || |||| ||||| |||||||  || | ||||||||||||||||||||||  || ||||||||| | |||||||||||||||||||    
T  2563115 aaaatgataactgcttgtaagaaaaaatctctatcaatgagacctacattaccccttgatgaatatgggtaatttacc-caaatgataagtatgattcga 2563017  T
Q  185 ttctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaa 232  Q
    ||||| ||| ||||| |  |||||||||||||||||||| ||||||||    
T  2563016 ttctgaaacaaatgatatagagatcacatgttgaatgaaagagatgaa 2562969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 126 - 277
Target Start/End: Complemental strand, 54437961 - 54437809
Alignment:
Q  126 gcctacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaag 224  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||| |  || |||  ||| ||| | ||| |||| ||||| |    
T  54437961 gcctacgttaccccttgttgaattaggggtaatttacctctaatgataaatatgatttgattttaaaatgaaaaagatggaaaccacgtgttaaatgagg 54437862  T
Q  225 gagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
     |||||||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  54437861 aagatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaa 54437809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 34761947 - 34762222
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||| |||||||||||||| ||||||| || || | ||||| | |||| |||||||||||| ||| |||||  ||| ||||||| |||||  || || |    
T  34761947 agatgaagatcacatgttgagtgaaggagataaaaaggtttgatattctcgagatgaaaatgataattgattgaaag-aaaaaac-ctatcaatgaggtc 34762044  T
Q  129 tacattaccccttgatgaattg-ggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    ||||| | | |||||||||||| || ||| ||| | |||||   ||||||| || ||||||  |||||| ||||  |||||||| ||||||||||| |||    
T  34762045 tacatcatctcttgatgaattgagggtaagttatccctaattgcaagtatggtttgattctccaacgaaagagatagagatcacgtgttgaatgaatgag 34762144  T
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttcttt 306  Q
    ||||| || ||||||||| || | |  ||||| ||||| |||||||||||||||||| || |||| | |||||||||||    
T  34762145 atgaataaatttgatgtttttcata-taaaatagtaaccaattgtaagaataaagattaaaaaaatagaatttttcttt 34762222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 13283806 - 13283927
Alignment:
Q  171 taagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaatt 270  Q
    |||||| ||||||||||| |||| || | || |||||||||| |||||||||| ||| |||| |||||||||||||||| || |||||| | || | |||    
T  13283806 taagtaggattcgattctagaacaaaagtgatggagatcacacgttgaatgaatgagttgaataagtttgatgttcttgtgatgaaaatagcaattgatt 13283905  T
Q  271 gtaagaataaagatgaagaaaa 292  Q
    | ||||||||||||||||||||    
T  13283906 gaaagaataaagatgaagaaaa 13283927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 54437887 - 54437625
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    ||||||| | ||| |||| ||||| | | ||||||| ||||| |||| ||||||| |||||||||| ||||| |||| |||||  |||||   || |||     
T  54437887 agatggaaaccacgtgttaaatgaggaagatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaaa--tctattaatgaggca 54437790  T
Q  129 tacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    | |||||||| ||||| |||| |||  |||||||   | |||| ||  ||||||  ||||||||||||| |||| | || | ||||||| |||||||||     
T  54437789 tgcattacccattgattaatttggggaaatttacgcatgatgacaaccatgattaaattctggaacgaaagagatgaagtttacatgttaaatgaaggat 54437690  T
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    |||||||||||| ||||| |||||| ||||||||||| |  |||||| ||||||||||| |||||    
T  54437689 atgaagaagtttaatgttattgagatgaaaatggtaatttgttgtaataataaagatgaggaaaa 54437625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 307
Target Start/End: Complemental strand, 7938220 - 7938039
Alignment:
Q  127 cctacattaccccttgatgaattgggt-taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaagg 225  Q
    |||||||||||| ||||||||||| || |||||||||  ||||||||| || ||||||||||| || | ||  | | ||||||| |||||||||||||||    
T  7938220 cctacattaccc-ttgatgaattgcgtgtaatttacccttaatgataaataagattcgattctagagcaaagaaaacggagatcgcatgttgaatgaagg 7938122  T
Q  226 agatgaagaagtttgatgttcttgagaggaaaa--tggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttg 307  Q
    |||| || || ||||||||| |||||| |||||  | | |||  || |||||||||||||||||||||| | ||||||||||||    
T  7938121 agataaaaaa-tttgatgtttttgagatgaaaaaatagcaacggatcgtaagaataaagatgaagaaaatataatttttctttg 7938039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 20519245 - 20519353
Alignment:
Q  154 taatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagag 253  Q
    ||||||| || |||||||||||  ||||  ||| |||||| || |||| |||||||||||||| |||||| ||||||||||| ||||| ||||||||||     
T  20519245 taatttaactataatgataagttggattaaattttggaacaaaggagatggagatcacatgtttaatgaaagagatgaagaaatttgacgttcttgagat 20519344  T
Q  254 gaaaatggt 262  Q
    |||||||||    
T  20519345 gaaaatggt 20519353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 281
Target Start/End: Complemental strand, 48646526 - 48646411
Alignment:
Q  165 taatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaa 264  Q
    |||||||||| | ||||||||| || |||||||||||  |||| || ||||||||||||| | ||||| ||||||||||||||| ||| ||||||||| |    
T  48646526 taatgataagcaggattcgattatgaaacgaatgagatagagaccatatgttgaatgaagaatatgaa-aagtttgatgttcttaagatgaaaatggtca 48646428  T
Q  265 ctaattgtaagaataaa 281  Q
     | ||| ||||||||||    
T  48646427 ttgattataagaataaa 48646411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 51260553 - 51260654
Alignment:
Q  132 attaccccttgatgaattgggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatga 231  Q
    |||||| |||||||||||||| | |||||||| | |||||||||| |||||||||||  || ||| || | ||| ||||||||||||||||| |||||||    
T  51260553 attacctcttgatgaattggggtgatttacct-tcatgataagtaggattcgattctaaaatgaaagatatggaaatcacatgttgaatgaatgagatga 51260651  T
Q  232 aga 234  Q
    |||    
T  51260652 aga 51260654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 21570436 - 21570356
Alignment:
Q  212 atgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    |||||||| |||  ||||||| |||||||||||||||| || |||||| ||||  |||||||||||||||||| |||||||    
T  21570436 atgttgaacgaattagatgaaaaagtttgatgttcttgtgatgaaaatagtaatcaattgtaagaataaagataaagaaaa 21570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 42091793 - 42091861
Alignment:
Q  207 atcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaag 275  Q
    |||||||||| |||||| |||||||| |||||||||||| |||||| ||||||| ||| ||||||||||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaag 42091861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 7641900 - 7641814
Alignment:
Q  228 atgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaatttttctttgctagggg 314  Q
    ||||| ||||||||||||||||| |  |||||| ||||| ||| ||||||||||| |||||||||  ||| ||||||||| ||||||    
T  7641900 atgaaaaagtttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaattttctttgatagggg 7641814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 292
Target Start/End: Original strand, 20519290 - 20519556
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcc 128  Q
    |||||||||||||||||| |||||| || |||||||  ||||  |||||||||||||||||||| |  |||| |||  ||||||  ||| |  || ||||    
T  20519290 agatggagatcacatgtttaatgaaagagatgaagaaatttgacgttcttgagatgaaaatggttacggattgtaataaaaaaaacctaacaatgaggcc 20519389  T
Q  129 tacattaccccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggag 227  Q
    ||||| | |  |||| ||||| ||| ||||||||   |||  | || |||||||| ||| |||||||||  ||| ||| |||||| ||||||||||| |     
T  20519390 tacatca-ctgttgaagaattgggggtaatttactcgtaa--acaaatatgattcaattttggaacgaaaaagatggatatcacacgttgaatgaagaaa 20519486  T
Q  228 atgaagaagtttgatg-----ttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||| ||||||||||     || || | |  |||||||||||| |||||||||| ||||||||||||||    
T  20519487 atgaaaaagtttgatgtttttttttttatattaaaatggtaactgattgtaagaagaaagatgaagaaaa 20519556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 6138566 - 6138487
Alignment:
Q  213 tgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||||||||| ||| |||| ||| |||||||||||| || |||||| | || | |||| ||||||||||||||||||||    
T  6138566 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 6138487  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 39341278 - 39341215
Alignment:
Q  31 atggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaa 94  Q
    ||||||||| |||||||||||||||| ||||| | ||||| | ||||| |||||||||||||||    
T  39341278 atggagatctcatgttgaatgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaa 39341215  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 45228277 - 45228378
Alignment:
Q  155 aatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagagg 254  Q
    |||||||  ||| |||||||||| |||||||| |||||| ||||||  ||| ||||||| ||||||| ||   ||||| |||||| |||||||||||| |    
T  45228277 aatttacacctattgataagtataattcgattttggaacaaatgagttggatatcacatattgaatgcag---atgaaaaagtttaatgttcttgagatg 45228373  T
Q  255 aaaat 259  Q
    |||||    
T  45228374 aaaat 45228378  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 312
Target Start/End: Complemental strand, 46303447 - 46303339
Alignment:
Q  203 ggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaagaaaattttt 302  Q
    |||||||||||||||||| ||| |||||||||||||||||| |||  |||  |||||| ||  | |||||||||| || |||||| ||||  | ||||||    
T  46303447 ggagatcacatgttgaataaagaagatgaagaagtttgatgctctatagataaaaatgatatttgattgtaagaa-aatgatgaaaaaaaatagattttt 46303349  T
Q  303 ctttgctagg 312  Q
    ||||| ||||    
T  46303348 ctttgatagg 46303339  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 48646492 - 48646417
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataag 105  Q
    |||| |||| || ||||||||||||| ||||||| | ||||| ||||||| ||||||||||||| | ||||||||||    
T  48646492 agatagagaccatatgttgaatgaagaatatgaaaa-gtttgatgttcttaagatgaaaatggtcattgattataag 48646417  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 42091793 - 42091955
Alignment:
Q  37 atcacatgttgaatgaaggatatgaagatgtttgttgttcttgagatgaaaatggtaaatgattataaggaaaaaactctatccgtggggcctacattac 136  Q
    |||||||||| |||||| || ||||| | ||||| |||| |||||||||||||| ||| | ||| |||||||||| |   ||  ||| | | |||| |||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaaggaaaaagc---attggtgagacatacaatac 42091889  T
Q  137 cccttgatgaatt-gggttaatttacctctaatgataagtatgattcgattctggaacgaatgaga 201  Q
    ||||||| ||||| ||| ||||||||| ||||| | ||||| || | |||| ||||||||| ||||    
T  42091890 cccttgacgaattgggggtaatttacccctaatcacaagtaagacttgattatggaacgaaagaga 42091955  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 34761943 - 34762025
Alignment:
Q  195 aatgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaa 277  Q
    ||||||| | |||||||||||||| |||||||||| || | ||||||| |||| |||| ||||||| ||| | |||| |||||    
T  34761943 aatgagatgaagatcacatgttgagtgaaggagataaaaaggtttgatattctcgagatgaaaatgataattgattgaaagaa 34762025  T

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Target: scaffold0136 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 36907 - 37012
Alignment:
Q  140 ttgatgaattgg-gttaatttacctctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 238  Q
    |||||||||||| | ||||||||   |||| ||||||| ||||||||| || ||| ||||||| | |||||||||||||||| || ||||||||||| ||    
T  36907 ttgatgaattggaggtaatttacacataataataagtaggattcgattatgaaacaaatgagatgaagatcacatgttgaataaacgagatgaagaaatt 37006  T
Q  239 tgatgt 244  Q
    ||||||    
T  37007 tgatgt 37012  T

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Target: scaffold1743 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 853 - 772
Alignment:
Q  210 acatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||||||||| ||||||||||||||||||||| | ||||| ||||||||| ||| | | ||||| |||||| ||||||||||    
T  853 acatgttgaatcaaggagatgaagaagtttgatatacttgaaaggaaaatgataaatga-tgtaaaaataaaaatgaagaaaa 772  T

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Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 5456 - 5522
Alignment:
Q  226 agatgaagaagtttgatgttcttgagaggaaaatggtaactaattgtaagaataaagatgaagaaaa 292  Q
    ||||||||||||||||| || |||||| |||||| ||| || ||| |||| ||||||||||||||||    
T  5456 agatgaagaagtttgatctttttgagatgaaaattgtacctgattttaaggataaagatgaagaaaa 5522  T

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Target: scaffold0564; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 5293 - 5334
Alignment:
Q  29 agatggagatcacatgttgaatgaaggatatgaagatgtttg 70  Q
    |||| ||||||||||||||||||||||| || ||||||||||    
T  5293 agatagagatcacatgttgaatgaaggagataaagatgtttg 5334  T

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Target: scaffold0564; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 5298 - 5335
Alignment:
Q  204 gagatcacatgttgaatgaaggagatgaagaagtttga 241  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  5298 gagatcacatgttgaatgaaggagataaagatgtttga 5335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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