View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_128 (Length: 311)
Name: NF1126_low_128
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_128 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 8131 - 8189
Alignment:
| Q |
189 |
gtacataactaatgacagccgatttagaaataaaaatttcttccactcattcatctcac |
247 |
Q |
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| T |
8131 |
gtacataactaatgacaaccaatttagaaataaaaatttcttccactcattcatttcac |
8189 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 29500350 - 29500416
Alignment:
| Q |
41 |
gattattctacatctcatttccacttattttaaaatatattactgatattacttccatgtttatttt |
107 |
Q |
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| T |
29500350 |
gattattctatatctcatttccatttatgtgaaaataaattactgacataacttccatgtttatttt |
29500416 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 24779252 - 24779190
Alignment:
| Q |
58 |
tttccacttattttaaaatatattactgatattacttccatgttta-ttttcgttatttattt |
119 |
Q |
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| T |
24779252 |
tttccatttattttaaaataaactattgaaattacttccatgtttatttttcgttatatattt |
24779190 |
T |
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