View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_129 (Length: 311)
Name: NF1126_low_129
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_129 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 35347657 - 35347785
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35347657 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattgtttacc |
35347756 |
T |
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| Q |
205 |
ttgaattcatcccaattttatgtctctgc |
233 |
Q |
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| T |
35347757 |
ttgaattcatcccaattttatgtctctgc |
35347785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 2274715 - 2274843
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2274715 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattgtttacc |
2274814 |
T |
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| Q |
205 |
ttgaattcatcccaattttatgtctctgc |
233 |
Q |
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| T |
2274815 |
ttgaattcatcccaattttatgtctctgc |
2274843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 39346205 - 39346333
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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| T |
39346205 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattgtttacc |
39346304 |
T |
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| Q |
205 |
ttgaattcatcccaattttatgtctctgc |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39346305 |
ttgaattcatcccaattttatgtctctgc |
39346333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 4012049 - 4012177
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
4012049 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagccgggtgctctgatggttggcaaaaatgaaattgtttacc |
4012148 |
T |
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| Q |
205 |
ttgaattcatcccaattttatgtctctgc |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4012149 |
ttgaattcatcccaattttatgtctctgc |
4012177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 25875738 - 25875864
Alignment:
| Q |
107 |
tggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacctt |
206 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
25875738 |
tggtgagtggaaaaagatgatagctgcgcgcagaatttgtgaagctgcacaaatcaagttgggtgctctgatggttggcaaaaatgaaattgtttacctt |
25875837 |
T |
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| Q |
207 |
gaattcatcccaattttatgtctctgc |
233 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
25875838 |
gaatttatcccaattttatgtctctgc |
25875864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 105 - 233
Target Start/End: Complemental strand, 10790350 - 10790222
Alignment:
| Q |
105 |
gctggtgagtggaaaaagatgatagctgcgcacagaatttgtgaagttgcacaaatcaagtcgggtgctctgatggttggcaaaaatgaaattatttacc |
204 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
10790350 |
gctggtgagtggaaaaagatgatagctgcatgtagaatttgtgaagctgcacaaatcaagttgggtgctctgatggttggcaaaaatgaaattgtttacc |
10790251 |
T |
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| Q |
205 |
ttgaattcatcccaattttatgtctctgc |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10790250 |
ttgaattcatcccaattttatgtctctgc |
10790222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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