View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_136 (Length: 305)

Name: NF1126_low_136
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_136
NF1126_low_136
[»] chr1 (9 HSPs)
chr1 (96-240)||(46358520-46358664)
chr1 (103-240)||(15373957-15374095)
chr1 (103-239)||(4530820-4530957)
chr1 (102-203)||(15374646-15374746)
chr1 (111-203)||(46357885-46357976)
chr1 (102-204)||(45597623-45597725)
chr1 (102-152)||(51610220-51610270)
chr1 (103-143)||(3788435-3788475)
chr1 (102-146)||(4626345-4626389)
[»] chr3 (8 HSPs)
chr3 (104-240)||(51492368-51492504)
chr3 (102-240)||(42146799-42146936)
chr3 (136-239)||(44385141-44385245)
chr3 (103-203)||(42147497-42147596)
chr3 (103-202)||(51491709-51491807)
chr3 (102-151)||(46580363-46580412)
chr3 (103-204)||(53714487-53714588)
chr3 (103-143)||(50306531-50306571)
[»] chr7 (6 HSPs)
chr7 (103-236)||(9379710-9379843)
chr7 (102-239)||(37693471-37693609)
chr7 (102-237)||(36661684-36661819)
chr7 (102-157)||(9378728-9378783)
chr7 (169-228)||(30915799-30915858)
chr7 (169-217)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (117-240)||(67901-68024)
scaffold0016 (103-203)||(67247-67346)
[»] chr2 (3 HSPs)
chr2 (103-239)||(6198815-6198951)
chr2 (103-218)||(5504344-5504458)
chr2 (103-143)||(26021919-26021959)
[»] chr8 (3 HSPs)
chr8 (103-239)||(511354-511491)
chr8 (51-97)||(44458876-44458922)
chr8 (51-97)||(44466409-44466455)
[»] chr4 (5 HSPs)
chr4 (102-228)||(5825333-5825457)
chr4 (168-228)||(20350402-20350462)
chr4 (102-153)||(55879793-55879844)
chr4 (102-156)||(49708720-49708774)
chr4 (177-221)||(6680273-6680317)
[»] chr5 (1 HSPs)
chr5 (103-143)||(30002864-30002904)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 46358664 - 46358520
Alignment:
Q  96 ctacggaggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcat 195  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46358664 ctacggaggtggcatttagggtgggatgggaaaagattttcccaccatgggaaagttgatttctaatcctttaatcaaatgaagagcatagttttatcat 46358565  T
Q  196 agtctctcaccactagattttttcacactatctcccacacccttt 240  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  46358564 agtctctcaccactaaattttttcacactatctcccacacccttt 46358520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 15373957 - 15374095
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatgg-aaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccatgggaaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctc 15374056  T
Q  202 tcaccactagattttttcacactatctcccacacccttt 240  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  15374057 tcaccactagattttttcacactatctcccacatccttt 15374095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 4530957 - 4530820
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| |||| |||||| |||| ||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatatttttattatagactct 4530858  T
Q  203 caccactagatt-ttttcacactatctcccacaccctt 239  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  4530857 caccactagatttttttcacactatatcccacaccctt 4530820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 15374746 - 15374646
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | |||||||||||||||    
T  15374746 aggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctc 15374648  T
Q  202 tc 203  Q
    ||    
T  15374647 tc 15374646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 46357885 - 46357976
Alignment:
Q  111 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 203  Q
    ||||||||||| ||||||||||||| |||||||||  |||||||||| || || ||| || |||| |||| || | |||||||||||||||||    
T  46357885 ttagggtgggaaggggaaatatttttccaccatgggcaagttgattt-tagtcattggattaaataaagaacacacttttatcatagtctctc 46357976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 45597623 - 45597725
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||   |||||| | ||||||||||| | |||| |  ||| ||||  ||| ||||||  |||| |||||| |||||||||||||    
T  45597623 aggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatactttttaatggttggatcaaagaaagaccatagtattatcatagtctc 45597722  T
Q  202 tca 204  Q
    |||    
T  45597723 tca 45597725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 51610270 - 51610220
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagtt 152  Q
    |||||||||||||||||||  || | |||||||||||||||||| ||||||    
T  51610270 aggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtt 51610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 3788435 - 3788475
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccat 3788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 4626389 - 4626345
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatgga 146  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||    
T  4626389 aggtggcatttagggtgggagagggaaaaaatttcccaccatgga 4626345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 51492504 - 51492368
Alignment:
Q  104 gtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 203  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctctc 51492405  T
Q  204 accactagattttttcacactatctcccacacccttt 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  51492404 accactagattttttcacactatctcccacacccttt 51492368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 42146799 - 42146936
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42146799 aggtggcatttagggtgggatggg-aaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctc 42146897  T
Q  202 tcaccactagattttttcacactatctcccacacccttt 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42146898 tcaccactagattttttcacactatctcccacacccttt 42146936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 44385245 - 44385141
Alignment:
Q  136 cccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatt-ttttcacactatctcccaca 234  Q
    ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||    
T  44385245 cccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactctcaccactagatttttttcacactatatcccaca 44385146  T
Q  235 ccctt 239  Q
    |||||    
T  44385145 ccctt 44385141  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 42147596 - 42147497
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 42147498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 51491709 - 51491807
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||| |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  51491709 ggtggtatttagggtgggaaggggaaagatttttccaccatggacaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 51491807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 46580363 - 46580412
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagt 151  Q
    |||||||||||||||||||  || |||| ||||||| |||||||||||||    
T  46580363 aggtggcatttagggtgggtaggagaaagattttcctaccatggaaaagt 46580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 53714487 - 53714588
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||   |||||| | ||||||||||||| |||| |  ||| |||   ||| ||||||  |||| |||||| ||||||||||||||    
T  53714487 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 53714586  T
Q  203 ca 204  Q
    ||    
T  53714587 ca 53714588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 50306571 - 50306531
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccat 50306531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 9379843 - 9379710
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9379843 ggtggcatttagggtgggatggggaaagatttttccactatgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctct 9379744  T
Q  203 caccactagattttttcacactatctcccacacc 236  Q
    ||||||||||||||||||||||||||||||||||    
T  9379743 caccactagattttttcacactatctcccacacc 9379710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 102 - 239
Target Start/End: Complemental strand, 37693609 - 37693471
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||    
T  37693609 aggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactc 37693510  T
Q  202 tcaccactagatt-ttttcacactatctcccacaccctt 239  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  37693509 tcaccactagatttttttcacactatatcccacaccctt 37693471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 36661684 - 36661819
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||   |||||| | ||||||||||||| |||||   ||| | | | ||  ||||| ||||||||||| |||||| |||| |||    
T  36661684 aggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagtatttttgtgaccattagatcaattgaagagcataattttattatagactc 36661783  T
Q  202 tcaccactagattttttcacactatctcccacaccc 237  Q
    |||||| |||||||||||||||||||| ||||||||    
T  36661784 tcaccattagattttttcacactatcttccacaccc 36661819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 9378728 - 9378783
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgattt 157  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  9378728 aggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttgattt 9378783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 30915799 - 30915858
Alignment:
Q  169 atcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 228  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  30915799 atcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 30915858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 30402836 - 30402788
Alignment:
Q  169 atcaaatgaagagcatagttttatcatagtctctcaccactagattttt 217  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| ||||||    
T  30402836 atcaaatgaagaccatacttttatcatactctctcaacactatattttt 30402788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 68024 - 67901
Alignment:
Q  117 tgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 216  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  68024 tgggatggggaaagattttcccaccttgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 67925  T
Q  217 ttcacactatctcccacacccttt 240  Q
    |||||||||||||||||| |||||    
T  67924 ttcacactatctcccacatccttt 67901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 67247 - 67346
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 67345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 6198951 - 6198815
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||   |||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||| ||||||||| |||||| |||| ||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagttgatttataacctttggatcaaataaagagcataattttattataggctct 6198852  T
Q  203 caccactagattttttcacactatctcccacaccctt 239  Q
    |||||||||||||||| ||||||||||||||||||||    
T  6198851 caccactagatttttttacactatctcccacaccctt 6198815  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 5504344 - 5504458
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||| ||||||| | |||||||| || |||||| |||||| | | | ||  |||||||||| | |||| |||||| ||||  | |    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaag-tgatttttgaccattagatcaaatgaataacataattttataatagatttt 5504442  T
Q  203 caccactagatttttt 218  Q
    || |||||||||||||    
T  5504443 caacactagatttttt 5504458  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 26021959 - 26021919
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccat 26021919  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 511491 - 511354
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||    ||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||||||||||||| |||||| |||| ||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaagttgatttataacctttggatcaaatgaagagcataattttattataggctct 511392  T
Q  203 caccactagatt-ttttcacactatctcccacaccctt 239  Q
    |||||||||||| |||||||||||||||||||||||||    
T  511391 caccactagatttttttcacactatctcccacaccctt 511354  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 44458922 - 44458876
Alignment:
Q  51 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44458922 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 44458876  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 44466455 - 44466409
Alignment:
Q  51 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44466455 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 44466409  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 5825333 - 5825457
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    ||||||||||||||||||||  |||||| | ||||||||||| | ||||||  ||||||| | ||  ||||||||| || || | | ||||| || ||||    
T  5825333 aggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagtt-ttttctaaccattagatcaaatgaggaacacattattatcctactctc 5825431  T
Q  202 tcaccactagattttttcacactatct 228  Q
    ||| ||||||||||||| |||||||||    
T  5825432 tcaacactagatttttt-acactatct 5825457  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 20350402 - 20350462
Alignment:
Q  168 aatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 228  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  20350402 aatcaaatgaagatcatacttttatcatactctctcaacactatatttttccccactatct 20350462  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 55879793 - 55879844
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttg 153  Q
    |||||||||||||||||||   |||||||| ||||||||||||| |||||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaagttg 55879844  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 49708774 - 49708720
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatt 156  Q
    |||||||||||||||||||   |||||| | ||||||||||||||||||| ||||    
T  49708774 aggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagatt 49708720  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 6680317 - 6680273
Alignment:
Q  177 aagagcatagttttatcatagtctctcaccactagattttttcac 221  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||||    
T  6680317 aagaacatagttttatcatagattctcaacactagattttttcac 6680273  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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