View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_142 (Length: 297)
Name: NF1126_low_142
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_142 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 4952143 - 4952410
Alignment:
| Q |
18 |
cattcgtcggtgcttcctttcgtcgatgatgttaaactgaagttcatctgcttcatcagaagtagttgagttgctgcttaaacatgatgggtaatggaag |
117 |
Q |
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| T |
4952143 |
cattcgtcggtgcttcctttcatcgatgatgttaaactgaagttcatctgcttcatcagaagtagttgagttgctgcttaaacatgatgggtaatggaag |
4952242 |
T |
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| Q |
118 |
tttggtaagctgcctaaaagattatttatatggtaatttggaatttcattctgtggtaagacaaagtttggttgaacttggaatgaattctcaggaggag |
217 |
Q |
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| T |
4952243 |
tttggtaagctgcctaaaagattatttatatggtaatttggaatttcattctgtggtaagacaaagtttggttgaacttggaatgaattctcaggaggag |
4952342 |
T |
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| Q |
218 |
ttagataattgactcctctgatttctctaggaaccatggttagaattttattagactttgaggatatt |
285 |
Q |
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| T |
4952343 |
ttagataattgactcctctgatctcactaggaaccatggctagaattttattagactttgagggtatt |
4952410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 102 - 268
Target Start/End: Complemental strand, 10483415 - 10483249
Alignment:
| Q |
102 |
tgatgggtaatggaagtttggtaagctgcctaaaagattatttatatggtaatttggaatttcattctgtggtaagacaaagtttggttgaacttggaat |
201 |
Q |
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| T |
10483415 |
tgatgggtaatggaagtttggtaaagtacctaaaatattacttagatggtaatttggaatttcattctgtggcaatacaaagtttggttgaacatggaat |
10483316 |
T |
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| Q |
202 |
gaattctcaggaggagttagataattgactcctctgatttctctaggaaccatggttagaattttat |
268 |
Q |
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| T |
10483315 |
gaattctcaagaggagttagataattgactcctctcatctcactaggaaccatggctagaattttat |
10483249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 10483529 - 10483443
Alignment:
| Q |
18 |
cattcgtcggtgcttcctttcgtcgatgatgttaaactgaagttcatctgcttcatcagaagtagttgagttgctgcttaaacatga |
104 |
Q |
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| T |
10483529 |
cattcgtcggtgcttcctttcgtcgatgatattgaactgaagttcatctgcttcatcagaagtagttgagttgctacttaaacatga |
10483443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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