View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1126_low_145 (Length: 291)
Name: NF1126_low_145
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_145 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 47385912 - 47385653
Alignment:
| Q |
30 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtggg |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47385912 |
ttcttgttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtggg |
47385813 |
T |
|
| Q |
130 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47385812 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
47385713 |
T |
|
| Q |
230 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctctgctcctcca |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47385712 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctcca |
47385653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 47372991 - 47373275
Alignment:
| Q |
1 |
tcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatggcttctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47372991 |
tcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggcttctat |
47373090 |
T |
|
| Q |
101 |
cagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctct |
200 |
Q |
| |
|
|||||||||| || || ||||||||||||||||| ||||||||||| || ||||| |||||| ||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
47373091 |
cagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgatcctct |
47373190 |
T |
|
| Q |
201 |
catcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaaggttctctctgctcc |
285 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||| ||||||||||||| ||| ||| || |||||||| ||| |||||| |
|
|
| T |
47373191 |
tatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttgctcc |
47373275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
96 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| |
|
|
| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University