View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_148 (Length: 290)
Name: NF1126_low_148
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_148 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 8087818 - 8087625
Alignment:
| Q |
33 |
catacatgtgtattttccattttccaacttgcaaactttggtacagtctttacatccatgaaacgtctatccatatcgggtggcattcaattttttatct |
132 |
Q |
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| T |
8087818 |
catacatgtgtattttccattttccaagttgcaaactttggtacagtctttacatccatcatacgtctatccatatcgggtggcattcaattttttatct |
8087719 |
T |
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| Q |
133 |
ctgcaatagtgacatagatggtttcctgaaataataaacaaattaagaaatgatatgttcaacaatagtagaaattgaatgatatacaatgtat |
226 |
Q |
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| T |
8087718 |
ctgcaatagtgacatagatggtttcgtgaaataataaacaaattaagaaatgatatgttcaacaatagtagaaattgaatgatatataatgtat |
8087625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 8087611 - 8087556
Alignment:
| Q |
221 |
atgtatgaaattagcaacaacgatacatacattctggattttattgatttctgaag |
276 |
Q |
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| T |
8087611 |
atgtatgaaattagtaacaacgatacatacattctggattttatttatttctgaag |
8087556 |
T |
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