View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_150 (Length: 290)
Name: NF1126_low_150
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_150 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14243485 - 14243720
Alignment:
| Q |
1 |
aatgtagtttgtgcttgtgcttgtggttgtgtaattgtagtgaacaaataatgaatacctgaacattaggttgtctttggcttaattctcttcatcttgg |
100 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14243485 |
aatgtagtttgtgcttgtgcttgtggctatgtaattgtagtgaacaaataatgaatacctgaacattaggttgtctttggcttaattctcttcatcctgg |
14243584 |
T |
|
| Q |
101 |
aaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagtttcaacaagagatatctatggttaaaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14243585 |
aaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagtttcaacaagagatatctatggttaaaaag |
14243684 |
T |
|
| Q |
201 |
aaggaaggatttttattttagtacctaatgcgttat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
14243685 |
aaggaaggatttttattttagtacctaatgcgttat |
14243720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 43858333 - 43858170
Alignment:
| Q |
72 |
tgtctttggcttaattctcttcatcttggaaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagt |
171 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||||||| || ||| |
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| T |
43858333 |
tgtctttggcttaattctcttcgccctggaatataggaaaacaccagaaagagctataccagttcctgcagagaattaataagcacataaaattttcagt |
43858234 |
T |
|
| Q |
172 |
ttcaacaagagatatctatggttaaaaagaaggaaggatttttattttagtacctaatgcgtta |
235 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
43858233 |
ttcaacaagagatatatatggttaaaaagaaggaagcaattttattttagtacctaatgcgtta |
43858170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6354035 - 6354270
Alignment:
| Q |
1 |
aatgtagtttgtgcttgtgcttgtggttgtgtaattgtagtgaacaaataatgaatacctgaacattaggttgtctttggcttaattctcttcatcttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6354035 |
aatgtagtttgtgcttgtgcttgtggctatgtaattgtagtgaacaaataatgaatacctgaacattaggttgtctttggcttaattctcttcatcctgg |
6354134 |
T |
|
| Q |
101 |
aaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagtttcaacaagagatatctatggttaaaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6354135 |
aaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagtttcaacaagagatatctatggttaaaaag |
6354234 |
T |
|
| Q |
201 |
aaggaaggatttttattttagtacctaatgcgttat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6354235 |
aaggaaggatttttattttagtacctaatgcgttat |
6354270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 7562968 - 7563213
Alignment:
| Q |
1 |
aatgtagtttgtgcttgtgcttgtggttgtgtaattgtagtgaacaa-----------ataatgaatacctgaacattaggttgtctttggcttaattct |
89 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7562968 |
aatgtagtttgtgcttgtgcttgtggctgtgtaattgtagtgaacaaataatgtacaaataatgaatacctgaacattaggctgtctttggcttaattct |
7563067 |
T |
|
| Q |
90 |
cttcatcttggaaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagtttcaacaagagatatcta |
189 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
7563068 |
cttcattctggaaaataggaaaacaccataaaaagctagaccagatcctgcagaggattaataagcacataaattttttagtttaaacaagagatatcta |
7563167 |
T |
|
| Q |
190 |
tggttaaaaagaaggaaggatttttattttagtacctaatgcgtta |
235 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
7563168 |
tggctaaaaagaaggaaggaattttattttagtacctaatacgtta |
7563213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3011337 - 3011565
Alignment:
| Q |
1 |
aatgtagtttgtgcttgtgcttgtggttgtgtaattgtagtgaacaaataatgaatacctgaacattaggttgtctttggcttaattctcttcatcttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
3011337 |
aatgtagtttgtgcttgtgcttgtggctgtgtaattgtagtgaacaaataatgaatacctgaacattaggttgtctttggcttaattctcttcattctgg |
3011436 |
T |
|
| Q |
101 |
aaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagtttcaacaagagatatctatggttaaaaag |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |
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|
| T |
3011437 |
aaaataggaaaacaccataaaaagctataccaaatcatgcagaggattaataagcacataaattttttagtttaaacaagagatatctatggctaaaaag |
3011536 |
T |
|
| Q |
201 |
aaggaaggatttttattttagtacctaat |
229 |
Q |
| |
|
||||||| | ||||||||||||||||||| |
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|
| T |
3011537 |
aaggaagaaattttattttagtacctaat |
3011565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 8767570 - 8767333
Alignment:
| Q |
9 |
ttgtgcttgtgcttgtggttgtgtaattgtagtgaacaaataatg-----------aatacctgaacattaggttgtctttggcttaattctcttcatct |
97 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
8767570 |
ttgtgcttgtgcttgtggctgtgtaattgtagtgaacaaataatgtacaaataatgaatacctgaacattaggctgtctttggcttaattctcttcattc |
8767471 |
T |
|
| Q |
98 |
tggaaaataggagaacaccataaaaagctataccagttcctgcagaggattaataagcacataaaaagtttagtttcaacaagagatatctatggttaaa |
197 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |
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|
| T |
8767470 |
tggaaaataggaaaacaccataaaaagctagaccagatcctgcagaggattaataagcacataaattttttagtttaaacaagagatatctatggctaaa |
8767371 |
T |
|
| Q |
198 |
aagaaggaaggatttttattttagtacctaatgcgtta |
235 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8767370 |
aagaaggaaggaattttattttagtacctaatacgtta |
8767333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 36353531 - 36353471
Alignment:
| Q |
9 |
ttgtgcttgtgcttgtggttgtgtaattgtagtgaacaaataatgaatacctgaacattag |
69 |
Q |
| |
|
||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
36353531 |
ttgtgcttgtgtttgaggctgtgtaattgtagtgaataaataatgaatacctgaacattag |
36353471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 3620730 - 3620691
Alignment:
| Q |
240 |
ccctgttatatagtgttcagaacactcttttcaagatatt |
279 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3620730 |
ccctgttatataatgttccgaacactcttttcaagatatt |
3620691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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