View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_152 (Length: 289)
Name: NF1126_low_152
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_152 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 9695016 - 9695137
Alignment:
| Q |
66 |
agcctaagaggcctccaagtgctttcttcgttttcatgtaagattcggtgctaaaaattgttggaatcggtgcttattgttcacgaatttgttccgttga |
165 |
Q |
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| T |
9695016 |
agcctaagaggcctccaagtgctttcttcgttttcatgtaagattcggtgctaaaaattgttggaatcggtgcttattgttcacgaatttgttccgttga |
9695115 |
T |
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| Q |
166 |
agtttgatttaattctgacgag |
187 |
Q |
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| T |
9695116 |
agtttgatttaattttgacgag |
9695137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 9695168 - 9695241
Alignment:
| Q |
214 |
ctgcgtttcggtgaagttcaaaacgttacgtacgtgttccgttgaagctcgatttgcctgtgatgatttctttt |
287 |
Q |
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| T |
9695168 |
ctgcgtttcggtgaagttcaaaacgttacgaacgtgttccgttgaagttcgatttgattctgatgatttttttt |
9695241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 15501 - 15380
Alignment:
| Q |
66 |
agcctaagaggcctccaagtgctttcttcgttttcatgtaagattcggtgctaaaaattgttggaatcggtgcttattgttcacgaatttgttccgttga |
165 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| | ||||||||||||||||| ||||| |
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| T |
15501 |
agcctaagaggtctccaagtgctttcttcgttttcatgtaagattcggtgctaaaaattgttcgtattggtgctaaatgttcacgaatttgttcggttga |
15402 |
T |
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| Q |
166 |
agtttgatttaattctgacgag |
187 |
Q |
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| T |
15401 |
agttcgatttaattctgacgag |
15380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 54097252 - 54097292
Alignment:
| Q |
66 |
agcctaagaggcctccaagtgctttcttcgttttcatgtaa |
106 |
Q |
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| T |
54097252 |
agcctaagagacctccaagtgctttcttcgttttcatgtaa |
54097292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 31115661 - 31115622
Alignment:
| Q |
66 |
agcctaagaggcctccaagtgctttcttcgttttcatgta |
105 |
Q |
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| T |
31115661 |
agccaaagaggcctccaagtgctttcttcgttttcatgta |
31115622 |
T |
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