View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_157 (Length: 282)
Name: NF1126_low_157
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_157 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28216262 - 28216464
Alignment:
| Q |
1 |
aactaaaatacttaaatgaaatgataagaataatataggagttttctagtatgtaatgtggtaccaaatgctaagattgtaaacatatttataatcccaa |
100 |
Q |
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| T |
28216262 |
aactaaaatactttaatgaaataataagaataatataggagttttctagtatgtaatgtggtaccaaatgctaagattgtaaacatatttataatcctaa |
28216361 |
T |
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| Q |
101 |
ggactcctaatttcgtgcatcataataaactttaaacttaagatgtaacaactaaaattgatgctgtcaagttgtaatggttgtaaccaaccatttacac |
200 |
Q |
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| T |
28216362 |
ggactcctaatttcgtgcatcataataaactttaaacttaagatgtaacaactaaaattgatgctgtcaagttgtaatggttgtagccaaccatttacac |
28216461 |
T |
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| Q |
201 |
cat |
203 |
Q |
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||| |
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| T |
28216462 |
cat |
28216464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 17134360 - 17134314
Alignment:
| Q |
32 |
aatataggagttttctagtatgtaatgtggtaccaaatgctaagatt |
78 |
Q |
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|||||| |||||||||| ||||||||||||| |||||||||||||| |
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| T |
17134360 |
aatataagagttttctaatatgtaatgtggtgtcaaatgctaagatt |
17134314 |
T |
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