View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_160 (Length: 279)
Name: NF1126_low_160
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_160 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 46909300 - 46909035
Alignment:
| Q |
1 |
aatcctgaagcagattaatgaaacacacaatccttgccaagaagttgaaattcattagaagatgaccctctcttaactctttgatgcttggaaaaggtgt |
100 |
Q |
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| T |
46909300 |
aatcctgaagcagattaatgaaacacacaatccttaccaagaagttgaaattcattagaagatgaccctctcttaactttttgatgcttggaaaaggtgt |
46909201 |
T |
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| Q |
101 |
aatggaattctcattttgtggatatttggaaccgttgcactgaaaaatcacagagcactgtgcacgctgaaagtgcctatgatctttggcataatctgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909200 |
aatggaattctcattttgtggatatttggaaccgttgcactgaaaaatcgcagagcactgtgcacgctgaaagtgcctatgatctttggcataatctgaa |
46909101 |
T |
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| Q |
201 |
agattatttttcgaacttgatgtcagctattttacaagaattacattcttttccccaaggtgagaa |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909100 |
agattatttttcgaacttgatgtcagctattttacaagaattacattcttttccccaaggtgagaa |
46909035 |
T |
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