View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_165 (Length: 267)
Name: NF1126_low_165
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_165 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 44 - 241
Target Start/End: Original strand, 38151291 - 38151488
Alignment:
| Q |
44 |
cacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaaggctctgcgggctgtccattccagattttataactcacaaac |
143 |
Q |
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| T |
38151291 |
cacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaaggctctgcgggctgtccattccagattttataactcacaaac |
38151390 |
T |
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| Q |
144 |
cacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagctaagggatcaggtacaatttctgtttataagtctctgtg |
241 |
Q |
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| T |
38151391 |
cacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagctaagggatcaggtacaatttctgtttataagtctctgtg |
38151488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 35095283 - 35095112
Alignment:
| Q |
44 |
cacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaaggctctgcgggctgtccattccagattttataactcacaaac |
143 |
Q |
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|||||||||| |||||||| ||| ||||||||||| |||||||||||||| |||||| ||| | |||||||||||||||||||||||| |||| ||| |
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| T |
35095283 |
cacaaggttgttctgagtataatattactgttgttattaagcgagaggatagtataaaagctttacgggctgtccattccagattttatctctcaagaac |
35095184 |
T |
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| Q |
144 |
cacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagctaagggatcaggt |
215 |
Q |
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||| || |||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
35095183 |
caccatagcaatgggaattattggaccaggattaattgggagcacgctacttgatcaactaagggatcaggt |
35095112 |
T |
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