View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_166 (Length: 264)
Name: NF1126_low_166
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_166 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 46479026 - 46478768
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaa |
100 |
Q |
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| T |
46479026 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtttgtttgagtgtgccgtatttacccagaaaccccaaa |
46478927 |
T |
|
| Q |
101 |
gtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttattc------ttatatg |
194 |
Q |
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| T |
46478926 |
atgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttattcttattcttatatg |
46478827 |
T |
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| Q |
195 |
ctacgaatcagttacagatgtgtttc--cacaaatttctgcttgaattattactcccct |
251 |
Q |
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| T |
46478826 |
ctacgaatcagttacagatgtgtttctgcacaaatttctgcttgaattattactcccct |
46478768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 46494526 - 46494342
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaa |
100 |
Q |
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| T |
46494526 |
ttggggtgccatcgttggttggtatctttgcttgtttcgccctgagagagttaaagcctatgtgtgtctcagtgtgccgtatttacccagaaaccccaaa |
46494427 |
T |
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| Q |
101 |
gtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgttttcttatattcttat |
185 |
Q |
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| T |
46494426 |
gtgaaaccagttgatggcatgcgagctttatttggagatgactattatatctgcagattccaggttcgaattcatatatttttat |
46494342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 46490228 - 46490063
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaa |
100 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| || || ||| ||||||| |||||||||||||||||||| ||| |
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| T |
46490228 |
ttggggtgccatcattggttggtatctttgtttgtttcgccctgaaagaatcaaagcctacgtgtgtctgagtgttccgtatttacccagaaacccaaaa |
46490129 |
T |
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| Q |
101 |
gtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggtt |
166 |
Q |
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| T |
46490128 |
ttgaaacctgttgatggcatgcgagctgtgtatggtgatgattattatatctgcagattccaggtt |
46490063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 46516815 - 46516644
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttacccagaaaccccaaa |
100 |
Q |
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| T |
46516815 |
ttggggtgctatcattggttggtatctttgtttgtttcgtcctgagaaagtcaaggcttatgtttgcctcagtgttccattgttaccaagaaaccccaaa |
46516716 |
T |
|
| Q |
101 |
gtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttcgtttt |
172 |
Q |
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| T |
46516715 |
gtaaaacctgttgatggcatgcaagctttgtttggtgacgattattatatctgcagattccaggtttgtttt |
46516644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 46520456 - 46520292
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttaccc--agaaacccca |
98 |
Q |
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| T |
46520456 |
ttggggtgccatgattggttggtatctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtcttagtgttcc--atttaaccatagaaacccca |
46520359 |
T |
|
| Q |
99 |
aagtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggt |
165 |
Q |
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| T |
46520358 |
cagtgaagcctattgatggtaggcgtgctgcttatggagacgattattatatctgcagatttcaggt |
46520292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46524522 - 46524456
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
67 |
Q |
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| T |
46524522 |
ttggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46524456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46532075 - 46532009
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgt |
67 |
Q |
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||||||||| || |||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
46532075 |
ttggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcttatgtctgt |
46532009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 46326745 - 46326804
Alignment:
| Q |
4 |
gggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgt |
63 |
Q |
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| T |
46326745 |
gggtgccatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagcctatgt |
46326804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 46323037 - 46323203
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgtctgtttgagtgtgccgtatttaccc--agaaacccca |
98 |
Q |
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| T |
46323037 |
ttggggtgccatcattggttggtacctttgcatgtttcgccctgaaagaatcaaagcctatgtttgtctcagtgttcc--atttacgcgtagaaacccta |
46323134 |
T |
|
| Q |
99 |
aagtgaaaccagttgatggcatgcgagctttgtttggagatgattactatatctgcagattccaggttc |
167 |
Q |
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| T |
46323135 |
aaatcagaactgttgatggcatgcgtgctgcttatggagatgattattatatctctagatttcaggttc |
46323203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7475496 - 7475558
Alignment:
| Q |
1 |
ttggggtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagcttatgt |
63 |
Q |
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| T |
7475496 |
ttggggtgccatcattggttggtacctttgcacgtttcgccctgaaagaatcaaagcctatgt |
7475558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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