View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_170 (Length: 262)
Name: NF1126_low_170
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_170 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 26456012 - 26456266
Alignment:
| Q |
1 |
agcacgattttatccatgaacttggtgactgcaaacaaacgctccaaannnnnnncttcctcaagctctaaaactcccttcgttttttcacacttatcaa |
100 |
Q |
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| T |
26456012 |
agcacgattttatccatgaacttggtgactgcaaacaaacgctccaaatttttttcttcctcaagctctaaaactcccttcgttttttcacacttatcaa |
26456111 |
T |
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| Q |
101 |
taacagtataaaccnnnnnnngcaccatattttcttctaaatcttcgacctcggtatctgactttgttttcatggtgttcccaacttaagcatccaacaa |
200 |
Q |
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| T |
26456112 |
taacagtataaacctttttttgcaccatattttcttctaaatcttcgacctcggtatctgactttgttttcatggtgttcccaacttaagcatccaacaa |
26456211 |
T |
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| Q |
201 |
cattcttatttgggctctcaacctttgagtggagattttcatttggttcatctca |
255 |
Q |
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| T |
26456212 |
cattcttatttgggctctcaacctttgagtggagattttcatttggttcagctca |
26456266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 26455816 - 26455904
Alignment:
| Q |
160 |
gactttgttttcatggtgttcccaacttaagcatccaacaacattcttatttgggctctcaacctttgagtggagattttcatttggtt |
248 |
Q |
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| T |
26455816 |
gactttgtcatcatggtgttcccagctgaagcatccaccaactttcttattagggctctcaacctttgaggggagattttcatttggtt |
26455904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 26455375 - 26455414
Alignment:
| Q |
128 |
tattttcttctaaatcttcgacctcggtatctgactttgt |
167 |
Q |
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| T |
26455375 |
tattttcttctaaatctcggacctcggtatctgactttgt |
26455414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 26456380 - 26456413
Alignment:
| Q |
14 |
ccatgaacttggtgactgcaaacaaacgctccaa |
47 |
Q |
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| T |
26456380 |
ccatgaacttggtgactgcaaataaacgctccaa |
26456413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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