View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_171 (Length: 260)

Name: NF1126_low_171
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_171
NF1126_low_171
[»] chr4 (3 HSPs)
chr4 (76-254)||(15481306-15481484)
chr4 (174-254)||(15481169-15481249)
chr4 (174-218)||(10421426-10421470)
[»] chr3 (2 HSPs)
chr3 (76-254)||(38337212-38337390)
chr3 (174-254)||(38337077-38337157)
[»] chr8 (2 HSPs)
chr8 (76-254)||(43924753-43924931)
chr8 (174-254)||(43924618-43924698)
[»] chr6 (2 HSPs)
chr6 (174-254)||(27763547-27763627)
chr6 (76-158)||(27763683-27763765)
[»] scaffold0189 (1 HSPs)
scaffold0189 (174-254)||(12320-12400)
[»] chr1 (1 HSPs)
chr1 (174-254)||(14924808-14924884)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 15481306 - 15481484
Alignment:
Q  76 agtttaatcaacagacactcaattaccatcttcatttatatttggtgttgagtataagaggatcagagtgatggcactcaattaccatgcttcaacaatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15481306 agtttaatcaacagacactcaattaccatcttcatttatatctggtgttgagtataagaggaacagagtgatggcactcaattaccatgcttcaacaatt 15481405  T
Q  176 ccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  15481406 ccggcagcagcctagtggtgtgcggtggtggtaagaatgagaggaagaaagagagttgaagtagcagtgcatgttgttg 15481484  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 15481249 - 15481169
Alignment:
Q  174 ttccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    ||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  15481249 ttccggcagcaacctagtggtgtgtggtggtggtcaaaatgagaggaagaaagagagttgaagtagcagtgcatgttgttg 15481169  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 10421426 - 10421470
Alignment:
Q  174 ttccggcagcagcctagtggtgtgcggtgggggtcagaatgagag 218  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||    
T  10421426 ttccggcagcagcctagtggtgtgcagtggtggtcagaaagagag 10421470  T

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Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 38337212 - 38337390
Alignment:
Q  76 agtttaatcaacagacactcaattaccatcttcatttatatttggtgttgagtataagaggatcagagtgatggcactcaattaccatgcttcaacaatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38337212 agtttaatcaacagacactcaattaccatcttcatttatatctggtgttgagtataagaggaacagagtgatggcactcaattaccatgcttcaacaatt 38337311  T
Q  176 ccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  38337312 ccggcagcagcctagtggtgtgcggtggtggttagaatgagaggaagaaagagagttgaagtagcagtgcatgttgttg 38337390  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 38337157 - 38337077
Alignment:
Q  174 ttccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  38337157 ttccggcagcagcctagtggtgtgcggtggtggtcagaatgagaggaagaaagagagttgaagtagcagttcatgttgttg 38337077  T

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Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 76 - 254
Target Start/End: Original strand, 43924753 - 43924931
Alignment:
Q  76 agtttaatcaacagacactcaattaccatcttcatttatatttggtgttgagtataagaggatcagagtgatggcactcaattaccatgcttcaacaatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  43924753 agtttaatcaacagacactcaattaccatcttcatttatatctggtgttgagtataagaggaacagagtgatggcactcgattaccatgcttcaacaatt 43924852  T
Q  176 ccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  43924853 ccggcagcagcctagtggtgtgcggtggtggtcagaatgagaggaaaaaagagagttgaagtagcggtgcatgttgttg 43924931  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 43924698 - 43924618
Alignment:
Q  174 ttccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  43924698 ttccggcagcagcctagtggtgtgcggtgatggtcagaatgagaggaagaaagagagttgaagtagcagttcatgttgttg 43924618  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 27763627 - 27763547
Alignment:
Q  174 ttccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  27763627 ttccggcagcagcctagtggtgtgcggtggtggtcagaatgagaggaagaaagagagttgaagtagcggtgcatgttgttg 27763547  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 27763683 - 27763765
Alignment:
Q  76 agtttaatcaacagacactcaattaccatcttcatttatatttggtgttgagtataagaggatcagagtgatggcactcaatt 158  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  27763683 agtttaatcaacagacactcaattacaaccttcatttatatctggtgttgagtataagaggaacggagtgatggcattcaatt 27763765  T

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Target: scaffold0189 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 12400 - 12320
Alignment:
Q  174 ttccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||    
T  12400 ttccggcagcagcctagtggtgtgcggtggtggtcagaatgagaggaagaaagagagttgaagtagtggtgcatgttgttg 12320  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 14924884 - 14924808
Alignment:
Q  174 ttccggcagcagcctagtggtgtgcggtgggggtcagaatgagaggaagaaagagagttgaagtagcagtgcatattgttg 254  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    ||||||||||||||||| |||||| ||||||    
T  14924884 ttccggcagcagcctagtggtgtgtggtggtggtcagaatgagagg----aagagagttgaagtagcggtgcatgttgttg 14924808  T

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