View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_172 (Length: 257)

Name: NF1126_low_172
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_172
NF1126_low_172
[»] chr3 (7 HSPs)
chr3 (178-254)||(27603169-27603245)
chr3 (178-240)||(3480338-3480400)
chr3 (178-240)||(15766410-15766472)
chr3 (178-240)||(17360719-17360781)
chr3 (178-240)||(20094041-20094103)
chr3 (178-240)||(17365361-17365423)
chr3 (178-233)||(43556173-43556228)
[»] scaffold0067 (1 HSPs)
scaffold0067 (182-254)||(32072-32144)
[»] scaffold0011 (1 HSPs)
scaffold0011 (178-254)||(3663-3739)
[»] chr8 (6 HSPs)
chr8 (178-254)||(19432071-19432147)
chr8 (178-254)||(19568221-19568297)
chr8 (178-240)||(21647473-21647535)
chr8 (178-240)||(32012340-32012402)
chr8 (178-235)||(4540087-4540144)
chr8 (178-235)||(6009597-6009654)
[»] chr6 (4 HSPs)
chr6 (178-254)||(10489767-10489843)
chr6 (178-254)||(19480174-19480250)
chr6 (178-240)||(22701637-22701699)
chr6 (182-254)||(17286169-17286241)
[»] chr2 (8 HSPs)
chr2 (178-257)||(13289095-13289174)
chr2 (178-240)||(42726839-42726901)
chr2 (178-240)||(44757991-44758053)
chr2 (182-254)||(27567963-27568035)
chr2 (179-233)||(3174668-3174722)
chr2 (203-254)||(27421273-27421324)
chr2 (178-250)||(28449598-28449668)
chr2 (178-237)||(32081387-32081447)
[»] chr7 (7 HSPs)
chr7 (178-256)||(15235252-15235330)
chr7 (178-240)||(33239817-33239879)
chr7 (178-240)||(47995614-47995676)
chr7 (192-256)||(14785127-14785191)
chr7 (178-240)||(17497614-17497676)
chr7 (178-240)||(17555538-17555600)
chr7 (178-254)||(21221476-21221552)
[»] chr5 (7 HSPs)
chr5 (178-256)||(17548803-17548881)
chr5 (178-237)||(13586111-13586170)
chr5 (178-257)||(24774749-24774828)
chr5 (178-240)||(17506716-17506778)
chr5 (178-240)||(41855233-41855295)
chr5 (178-240)||(42021626-42021688)
chr5 (178-254)||(25687265-25687341)
[»] scaffold0166 (1 HSPs)
scaffold0166 (178-240)||(17132-17194)
[»] scaffold0165 (1 HSPs)
scaffold0165 (178-240)||(13627-13689)
[»] scaffold0014 (1 HSPs)
scaffold0014 (178-240)||(28187-28249)
[»] chr4 (9 HSPs)
chr4 (178-240)||(8983676-8983738)
chr4 (178-240)||(13697152-13697214)
chr4 (178-240)||(21303224-21303286)
chr4 (178-240)||(36355955-36356017)
chr4 (178-240)||(54345017-54345079)
chr4 (178-240)||(13688086-13688148)
chr4 (178-240)||(40000883-40000945)
chr4 (178-240)||(54993236-54993298)
chr4 (178-254)||(16950277-16950351)
[»] chr1 (4 HSPs)
chr1 (178-240)||(27713085-27713147)
chr1 (178-240)||(5726759-5726821)
chr1 (178-240)||(37407807-37407869)
chr1 (178-225)||(17133531-17133578)
[»] scaffold0517 (1 HSPs)
scaffold0517 (178-240)||(205-267)
[»] scaffold0468 (1 HSPs)
scaffold0468 (180-257)||(1101-1177)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 27603169 - 27603245
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27603169 tcaatctcactacattgaaaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 27603245  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 3480338 - 3480400
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  3480338 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 3480400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 15766410 - 15766472
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  15766410 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 15766472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17360781 - 17360719
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  17360781 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 17360719  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 20094041 - 20094103
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  20094041 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 20094103  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17365423 - 17365361
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||  | ||||||||| ||||    
T  17365423 tcaatctcactatgttgagaagatcttaaggaaatataattacttctattgtaaaccttcgag 17365361  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 43556228 - 43556173
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaac 233  Q
    ||||||||||||  |||||||||| ||| ||||||||||||| ||||| |||||||    
T  43556228 tcaatctcactatgttgagaagatattacggaaatataattactttgattgtaaac 43556173  T

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Target: scaffold0067 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 32072 - 32144
Alignment:
Q  182 tctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||    
T  32072 tctcactacgttgagaagatcttaaggaaatataattattttgattgtaaacctgcaagcacaccttatgatc 32144  T

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Target: scaffold0011 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 3739 - 3663
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| | ||||| |||||    
T  3739 tcaatctcactacgttgagaagatcttaaggaaatataattatttttattgtaaacctgcgagcacaccttttgatc 3663  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 19432147 - 19432071
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||||    
T  19432147 tcaatctcactacgttgagaagatcttaaggaaatataaatattttgattgtagacctgcgagcacaccttatgatc 19432071  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 19568297 - 19568221
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||| | |||||||||||    
T  19568297 tcaatctcactacgttgagaagatcttaaggaaatataaatattttgattgtagacctgcgagcacaccttatgatc 19568221  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 21647473 - 21647535
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  21647473 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 21647535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 32012402 - 32012340
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  32012402 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 32012340  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 4540087 - 4540144
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacct 235  Q
    |||||||| ||| |||||||||||||| ||||||||||| || |||||||| ||||||    
T  4540087 tcaatctcgctatattgagaagatcttgaggaaatataaatactttgactgcaaacct 4540144  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 6009597 - 6009654
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacct 235  Q
    |||| |||||||  ||||||||||||| |  |||||||||||||||||||| ||||||    
T  6009597 tcaacctcactatgttgagaagatcttcaaaaaatataattattttgactgcaaacct 6009654  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 10489843 - 10489767
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||| || | |||||||||||    
T  10489843 tcaatctcactacgttgagaagatcttacggaaatataattattttgattgtaaacctgcaagcacaccttatgatc 10489767  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 19480250 - 19480174
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| || | |||||||||||    
T  19480250 tcaatctcactacgttgagaagatcttaaggaaatataaatattttgattgtaaacctgcaagcacaccttatgatc 19480174  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 22701637 - 22701699
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  22701637 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 22701699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 17286169 - 17286241
Alignment:
Q  182 tctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||  |||| ||||| |||| |||||||||||||||||| ||||||||||| || | |||||||||||    
T  17286169 tctcactatgttgaaaagattttaaagaaatataattattttgattgtaaacctgcaagcacaccttatgatc 17286241  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 13289095 - 13289174
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatctaa 257  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||    
T  13289095 tcaatctcactatgctgagaagatcttaaggaaatataattattttgactgtaaacttgcaagcacaccttatgatctaa 13289174  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 42726839 - 42726901
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  42726839 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 42726901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 44757991 - 44758053
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  44757991 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 44758053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 27568035 - 27567963
Alignment:
Q  182 tctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||| ||||||||||||||||||||||||| ||||| || ||||||| |||||| | |||||||||||    
T  27568035 tctcactacgttgagaagatcttaaggaaatataactatttcgattgtaaacatgcgagcacaccttatgatc 27567963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 3174668 - 3174722
Alignment:
Q  179 caatctcactacattgagaagatcttaaggaaatataattattttgactgtaaac 233  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  3174668 caatctcactatgttgagaagatcttaaggaaatgtaattattttgactggaaac 3174722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 27421273 - 27421324
Alignment:
Q  203 ttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||||||||||||||||  ||||| ||| || |||||||||||||    
T  27421273 ttaaggaaatataattattttgaccataaacatgcaagaaaaccttatgatc 27421324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 28449668 - 28449598
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttat 250  Q
    ||||| ||||||  |||||||||||  ||||||||||||||||||||| ||||||| ||| || | |||||||    
T  28449668 tcaatatcactatgttgagaagatc--aaggaaatataattattttgattgtaaacatgcaagcacaccttat 28449598  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 32081447 - 32081387
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaa-tataattattttgactgtaaacctgc 237  Q
    ||||||||||||  |||||||||||| |  |||| |||||||||||||||| |||||||||    
T  32081447 tcaatctcactatgttgagaagatctcattgaaaatataattattttgactctaaacctgc 32081387  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 15235330 - 15235252
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatcta 256  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||| || | |||||||||||||    
T  15235330 tcaatctcactatgttgagaagatcttaaggaaatataattattttggttgtaaacctgcaaggacaccttatgatcta 15235252  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 33239879 - 33239817
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  33239879 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 33239817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 47995676 - 47995614
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  47995676 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 47995614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 14785191 - 14785127
Alignment:
Q  192 ttgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatcta 256  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  || | |||||||||||||    
T  14785191 ttgagaagatcttaaggaaatataattattttgactgtaaatctgtaaggacaccttatgatcta 14785127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17497676 - 17497614
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| ||||||||||||||||||||||||| || || || || |||||||||||    
T  17497676 tcaatctcactacgttgagaagatcttaaggaaatataactacttcgattgaaaacctgcgag 17497614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 17555538 - 17555600
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| ||||||||||||||||||||||||| || || || || |||||||||||    
T  17555538 tcaatctcactacgttgagaagatcttaaggaaatataactacttcgattgaaaacctgcgag 17555600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 21221476 - 21221552
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    ||||||||||   ||||||||||| |||| |||||||||||||| |||| |||||| ||| || |  ||||||||||    
T  21221476 tcaatctcacagtattgagaagattttaaagaaatataattattctgaccgtaaacttgcaagcatgccttatgatc 21221552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 17548803 - 17548881
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatcta 256  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||| || | |||||||||||||    
T  17548803 tcaatctcactatgttgagaagatcttaaggaaatataattattttggttgtaaacctgcaaggacaccttatgatcta 17548881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 13586111 - 13586170
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgc 237  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||    
T  13586111 tcaatctcactacgttgagaagatcttaaggaaatataaatatcttgattgtaaacctgc 13586170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 24774749 - 24774828
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatctaa 257  Q
    ||||||||||||| || ||||||||||||||||||||||||| || || |||||||||||||| | ||||| ||| ||||    
T  24774749 tcaatctcactacgttaagaagatcttaaggaaatataattacttcgattgtaaacctgcgagcacaccttgtgacctaa 24774828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 17506778 - 17506716
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||  |||||||||||||||||||||||||||| || || ||||||||||||||    
T  17506778 tcaatctcactatgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 17506716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 41855295 - 41855233
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  41855295 tcaatctcactacgttgagaagatcttaaggaaatataattacttcaattgtaaacctgcgag 41855233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 42021688 - 42021626
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  42021688 tcaatctcactacgttgagaagatcttaaggaaatataattacttcaattgtaaacctgcgag 42021626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 25687265 - 25687341
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    |||||||||||| ||||||||||| ||||||||||| ||||| ||| | ||||||||| | || | |||||||||||    
T  25687265 tcaatctcactatattgagaagattttaaggaaataaaattactttaattgtaaacctacaagcacaccttatgatc 25687341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 17132 - 17194
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  17132 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 17194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 13689 - 13627
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  13689 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 13627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 28249 - 28187
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  28249 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 28187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 8983676 - 8983738
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  8983676 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 8983738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 13697214 - 13697152
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  13697214 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 13697152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 21303224 - 21303286
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  21303224 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 21303286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 36356017 - 36355955
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  36356017 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 36355955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 54345079 - 54345017
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  54345079 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 54345017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 13688148 - 13688086
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  13688148 tcaatctcactacgttgagaagatcttaaggaaatataattacttaaattgtaaacctgcgag 13688086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 40000945 - 40000883
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  40000945 tcaatctcactacgttgagaagatcttaaggaaatataattacttctattgtaaacctgcgag 40000883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 54993298 - 54993236
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||  |||||||||||||||||||||||||||| || || ||||||||||||||    
T  54993298 tcaatctcactatgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 54993236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 16950351 - 16950277
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatc 254  Q
    |||||||| |||| |||||||||||  ||||||||| ||||||||||||| ||||| ||| || | |||||||||||    
T  16950351 tcaatctctctacgttgagaagatc--aaggaaatacaattattttgactttaaacttgcaagcacaccttatgatc 16950277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 27713147 - 27713085
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||||    
T  27713147 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctgcgag 27713085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 5726821 - 5726759
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || ||||||||| ||||    
T  5726821 tcaatctcactacgttgagaagatcttaaggaaatataattacttcgattgtaaacctacgag 5726759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 37407807 - 37407869
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  37407807 tcaatctcactacgttgagaagatcttaaggaaatataattacttcaattgtaaacctgcgag 37407869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 17133531 - 17133578
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttga 225  Q
    ||||||||| ||  |||||||||||||||||||||||||||| |||||    
T  17133531 tcaatctcattatgttgagaagatcttaaggaaatataattactttga 17133578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 267 - 205
Alignment:
Q  178 tcaatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgag 240  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  267 tcaatctcactacgttgagaagatcttaaggaaatataattacttctattgtaaacctgcgag 205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 1101 - 1177
Alignment:
Q  180 aatctcactacattgagaagatcttaaggaaatataattattttgactgtaaacctgcgagtaaaccttatgatctaa 257  Q
    |||||||| || ||||||| |||||||| |||| ||||||||| |||| ||||| ||| || | ||||||||||||||    
T  1101 aatctcacaacgttgagaatatcttaagaaaatgtaattattt-gactttaaacttgcaagcacaccttatgatctaa 1177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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