View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_177 (Length: 253)
Name: NF1126_low_177
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_177 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 31251996 - 31252115
Alignment:
| Q |
1 |
tgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
31251996 |
tgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaagg |
31252095 |
T |
|
| Q |
101 |
aatttgtgatgagaattatc |
120 |
Q |
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|||||||||||||||||||| |
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| T |
31252096 |
aatttgtgatgagaattatc |
31252115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 25815147 - 25815030
Alignment:
| Q |
1 |
tgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaagg |
100 |
Q |
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|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
25815147 |
tgatttcacctaactttatcatctaatggggtcattttatacatggtaatgaaatgagataagaatcaa-tagatgttaattaatcataaaatcaaaagg |
25815049 |
T |
|
| Q |
101 |
aatttgtgatgagaattat |
119 |
Q |
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||||||||||||||||||| |
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| T |
25815048 |
aatttgtgatgagaattat |
25815030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 23052912 - 23052807
Alignment:
| Q |
15 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatataatcaaaaggaatttgtgatgaga |
114 |
Q |
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|||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
|
| Q |
115 |
attatc |
120 |
Q |
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||||| |
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| T |
23052812 |
tttatc |
23052807 |
T |
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