View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_178 (Length: 253)
Name: NF1126_low_178
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_178 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 25955151 - 25954918
Alignment:
| Q |
13 |
aatatcagttaacaataaatatctaatttgagtcgatggctcataaatcatttgatannnnnnnnngatagaattcttttaataacttcaatcatagaaa |
112 |
Q |
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| T |
25955151 |
aatatcagttaacaataaatatctaatttgagtcgatggctcataaatcatttgatatatttttttgatagaattcttttaataacttcaatcatagaaa |
25955052 |
T |
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| Q |
113 |
gttgct-nnnnnnnctcttaatcatagagataatgtgctattaaat-acaaactaaatcaacttcgttaacaaaacnnnnnnnnnnnnncaccctaaatc |
210 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
25955051 |
gttgctaaaaaaaactcttaatcatagagataatgtgctattaaataacaaactaaatcaacttcgttaacaaaa---------aaaaacacccaaaatc |
25954961 |
T |
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| Q |
211 |
aaccggtatggtgacatattttgagttacttccatataacaaa |
253 |
Q |
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| T |
25954960 |
aaccggtatggtgacatattttgagttacttccatataacaaa |
25954918 |
T |
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