View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_180 (Length: 253)

Name: NF1126_low_180
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1126_low_180
NF1126_low_180
[»] chr1 (28 HSPs)
chr1 (124-253)||(37967145-37967277)
chr1 (30-99)||(35152655-35152725)
chr1 (30-97)||(14879283-14879351)
chr1 (30-99)||(40772784-40772854)
chr1 (30-66)||(30711639-30711675)
chr1 (39-99)||(42533057-42533118)
chr1 (30-66)||(4960821-4960857)
chr1 (30-66)||(6367874-6367910)
chr1 (59-99)||(17661885-17661925)
chr1 (30-66)||(41099045-41099081)
chr1 (30-65)||(1103773-1103808)
chr1 (30-65)||(1841771-1841806)
chr1 (30-65)||(13914149-13914184)
chr1 (30-65)||(26024704-26024739)
chr1 (30-65)||(40210451-40210486)
chr1 (35-66)||(46899917-46899948)
chr1 (30-65)||(48779431-48779466)
chr1 (30-64)||(17661933-17661967)
chr1 (36-65)||(19017710-19017739)
chr1 (35-64)||(46899143-46899172)
chr1 (30-66)||(183301-183337)
chr1 (59-99)||(7821308-7821348)
chr1 (38-66)||(24009655-24009683)
chr1 (38-66)||(32917580-32917608)
chr1 (30-66)||(34464529-34464565)
chr1 (37-65)||(36694363-36694391)
chr1 (37-65)||(36710464-36710492)
chr1 (30-66)||(47999203-47999239)
[»] chr4 (34 HSPs)
chr4 (30-99)||(1178090-1178159)
chr4 (30-95)||(53702124-53702189)
chr4 (39-99)||(16006127-16006188)
chr4 (30-66)||(24711392-24711428)
chr4 (30-66)||(18831629-18831665)
chr4 (30-66)||(34765460-34765496)
chr4 (30-66)||(35028078-35028114)
chr4 (30-66)||(46661226-46661262)
chr4 (30-66)||(49879287-49879323)
chr4 (30-66)||(50418748-50418784)
chr4 (30-66)||(51692831-51692867)
chr4 (30-66)||(54713709-54713745)
chr4 (35-66)||(10781801-10781832)
chr4 (30-65)||(14802047-14802082)
chr4 (30-65)||(17356006-17356041)
chr4 (35-66)||(24349754-24349785)
chr4 (30-65)||(37976234-37976269)
chr4 (35-65)||(148072-148102)
chr4 (39-81)||(22567089-22567131)
chr4 (30-64)||(24350744-24350778)
chr4 (39-81)||(27934821-27934863)
chr4 (35-68)||(8439541-8439574)
chr4 (36-65)||(53129587-53129616)
chr4 (38-66)||(1179120-1179148)
chr4 (30-66)||(5369179-5369215)
chr4 (30-66)||(7452115-7452151)
chr4 (38-66)||(10780793-10780821)
chr4 (38-66)||(10974402-10974430)
chr4 (30-66)||(13058294-13058330)
chr4 (30-66)||(36008924-36008960)
chr4 (30-66)||(43155609-43155645)
chr4 (30-66)||(44967149-44967185)
chr4 (36-99)||(48528518-48528582)
chr4 (30-66)||(52909565-52909601)
[»] chr3 (17 HSPs)
chr3 (30-97)||(40033554-40033622)
chr3 (30-99)||(51993997-51994067)
chr3 (30-99)||(55052325-55052395)
chr3 (30-94)||(35712082-35712147)
chr3 (30-66)||(19741003-19741039)
chr3 (30-66)||(36417768-36417804)
chr3 (30-66)||(36418000-36418036)
chr3 (30-66)||(46475093-46475129)
chr3 (30-65)||(26463713-26463748)
chr3 (30-65)||(40758422-40758457)
chr3 (35-66)||(53757040-53757071)
chr3 (35-65)||(41558199-41558229)
chr3 (35-63)||(3849114-3849142)
chr3 (30-66)||(23458059-23458095)
chr3 (30-66)||(33689461-33689497)
chr3 (34-66)||(41558088-41558120)
chr3 (30-66)||(43384595-43384631)
[»] chr8 (27 HSPs)
chr8 (35-98)||(12199236-12199300)
chr8 (35-98)||(12443664-12443728)
chr8 (30-97)||(31608562-31608629)
chr8 (30-66)||(13186371-13186407)
chr8 (59-96)||(30712071-30712108)
chr8 (59-96)||(30719848-30719885)
chr8 (30-70)||(4405738-4405778)
chr8 (30-66)||(8316733-8316769)
chr8 (30-66)||(34685570-34685606)
chr8 (30-66)||(36928788-36928824)
chr8 (30-66)||(38862875-38862911)
chr8 (30-66)||(39071954-39071990)
chr8 (30-66)||(40318044-40318080)
chr8 (30-65)||(12199031-12199066)
chr8 (30-65)||(12443459-12443494)
chr8 (35-66)||(30710935-30710966)
chr8 (35-66)||(30712034-30712065)
chr8 (35-66)||(30719811-30719842)
chr8 (30-65)||(35756894-35756929)
chr8 (35-65)||(20385649-20385679)
chr8 (30-66)||(1425133-1425169)
chr8 (30-66)||(4994737-4994773)
chr8 (30-66)||(12272998-12273034)
chr8 (30-66)||(22915469-22915505)
chr8 (30-66)||(23663625-23663661)
chr8 (30-66)||(23698389-23698425)
chr8 (30-66)||(38955984-38956020)
[»] chr7 (15 HSPs)
chr7 (30-97)||(37657162-37657230)
chr7 (30-66)||(3914450-3914486)
chr7 (30-66)||(10936106-10936142)
chr7 (30-66)||(17885708-17885744)
chr7 (30-66)||(28469090-28469126)
chr7 (30-66)||(48788883-48788919)
chr7 (30-65)||(2640259-2640294)
chr7 (30-65)||(27396710-27396745)
chr7 (35-66)||(40380001-40380032)
chr7 (34-64)||(47945439-47945469)
chr7 (34-64)||(47950869-47950899)
chr7 (30-66)||(6571260-6571296)
chr7 (30-66)||(17102301-17102337)
chr7 (30-66)||(27992020-27992056)
chr7 (38-66)||(32053223-32053251)
[»] scaffold0295 (1 HSPs)
scaffold0295 (37-97)||(2462-2522)
[»] chr5 (35 HSPs)
chr5 (31-97)||(18670478-18670543)
chr5 (30-66)||(24547270-24547306)
chr5 (30-66)||(27937133-27937169)
chr5 (30-66)||(35512426-35512462)
chr5 (30-66)||(38475113-38475149)
chr5 (30-65)||(17202711-17202746)
chr5 (30-66)||(186731-186767)
chr5 (30-66)||(6150732-6150768)
chr5 (30-66)||(8322716-8322752)
chr5 (30-66)||(11047749-11047785)
chr5 (30-66)||(28269502-28269538)
chr5 (30-66)||(35920308-35920344)
chr5 (30-66)||(39453611-39453647)
chr5 (30-66)||(43159126-43159162)
chr5 (30-65)||(5994201-5994236)
chr5 (30-65)||(6301855-6301890)
chr5 (30-65)||(10684250-10684285)
chr5 (35-66)||(13362307-13362338)
chr5 (30-65)||(14194504-14194539)
chr5 (30-65)||(16083255-16083290)
chr5 (30-65)||(16156936-16156971)
chr5 (59-99)||(3528906-3528947)
chr5 (36-65)||(13963147-13963176)
chr5 (35-64)||(20814217-20814246)
chr5 (59-99)||(21265176-21265217)
chr5 (30-66)||(5255097-5255133)
chr5 (59-102)||(6301573-6301617)
chr5 (30-66)||(11762029-11762065)
chr5 (30-66)||(19517919-19517955)
chr5 (30-66)||(19892388-19892424)
chr5 (59-99)||(20814169-20814209)
chr5 (30-66)||(21265223-21265259)
chr5 (30-66)||(27587427-27587463)
chr5 (30-66)||(32242554-32242590)
chr5 (30-66)||(38442379-38442415)
[»] chr2 (10 HSPs)
chr2 (31-65)||(9076380-9076414)
chr2 (30-66)||(13692532-13692568)
chr2 (30-66)||(15848400-15848436)
chr2 (30-66)||(36755400-36755436)
chr2 (30-66)||(44713875-44713911)
chr2 (30-65)||(34448107-34448142)
chr2 (39-81)||(14900548-14900590)
chr2 (30-66)||(16099336-16099372)
chr2 (30-66)||(36480030-36480066)
chr2 (38-66)||(37895427-37895455)
[»] scaffold0707 (1 HSPs)
scaffold0707 (30-66)||(6391-6427)
[»] scaffold0007 (1 HSPs)
scaffold0007 (36-68)||(2059-2091)
[»] chr6 (16 HSPs)
chr6 (30-66)||(11434882-11434918)
chr6 (30-66)||(17734276-17734312)
chr6 (30-66)||(21627793-21627829)
chr6 (30-66)||(30337730-30337766)
chr6 (30-66)||(33517846-33517882)
chr6 (35-66)||(679946-679977)
chr6 (35-66)||(681045-681076)
chr6 (30-65)||(11393116-11393151)
chr6 (35-97)||(11435986-11436049)
chr6 (30-65)||(12080948-12080983)
chr6 (35-66)||(13379799-13379830)
chr6 (35-66)||(20651090-20651121)
chr6 (30-64)||(30804173-30804207)
chr6 (38-66)||(3059576-3059604)
chr6 (30-66)||(30726071-30726107)
chr6 (30-66)||(33647263-33647299)
[»] scaffold0031 (1 HSPs)
scaffold0031 (35-66)||(69282-69313)
[»] scaffold0005 (1 HSPs)
scaffold0005 (30-65)||(37645-37680)
[»] scaffold0775 (1 HSPs)
scaffold0775 (30-66)||(5042-5078)
[»] scaffold0075 (1 HSPs)
scaffold0075 (30-66)||(14509-14545)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 37967145 - 37967277
Alignment:
Q  124 aataatatctctaatagtt---ccttagtaggccaccatatctattatcttgaacgcctgaggtagccaagagaactacaatcctttatccaagaatgat 220  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37967145 aataatatctctaatagttattccttagtaggccaccatatctattatcttgaacgcctgaggtagccaagagaactacaatcctttatccaagaatgat 37967244  T
Q  221 gatcatcagtaaggtaataaagattactagtaa 253  Q
    ||| |||||||||||||||||||||||||||||    
T  37967245 gataatcagtaaggtaataaagattactagtaa 37967277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 35152655 - 35152725
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaatacag-gacccatttttaaacgacc 99  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||    
T  35152655 caaaggacgaaattttaaatgattaatgattgcaaggattagcgaatacagagactaatttttaaacgacc 35152725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 14879283 - 14879351
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaatacag-gacccatttttaaacga 97  Q
    |||| ||||||||||||||||||||||| |||||||||||||| |||| || |||| ||||||||||||    
T  14879283 caaaggacgaaattttaaatgattaatggttgcaaggattagcgaatatagagaccaatttttaaacga 14879351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 40772784 - 40772854
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaataca-ggacccatttttaaacgacc 99  Q
    |||| |||||||||| |||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  40772784 caaaggacgaaatttgaaataattaatgattgcaaggattagcgaatacagggaccgattttcaaacgacc 40772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 30711639 - 30711675
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  30711639 caaatgacgaaattttaaatgattaatgattgcaagg 30711675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 42533118 - 42533057
Alignment:
Q  39 aaattttaaatgattaatgattgcaaggattagcaaataca-ggacccatttttaaacgacc 99  Q
    ||||||||||||||| |||||||||||||||| | |||||| ||||  ||||||||||||||    
T  42533118 aaattttaaatgattgatgattgcaaggattaacgaatacatggactaatttttaaacgacc 42533057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 4960821 - 4960857
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4960821 caaaggacgaaattttaaatgattaatgattgcaagg 4960857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 6367874 - 6367910
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6367874 caaaggacgaaattttaaatgattaatgattgcaagg 6367910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 17661925 - 17661885
Alignment:
Q  59 ttgcaaggattagcaaatacaggacccatttttaaacgacc 99  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  17661925 ttgcaaggattagcgaatacaggaccaatttttaaacgacc 17661885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 41099045 - 41099081
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||| ||||    
T  41099045 caaatgacgaaattttaaatgattaatgattgtaagg 41099081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 1103773 - 1103808
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  1103773 caaaggacgaaattttaaatgattaatgattgcaag 1103808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 1841771 - 1841806
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  1841771 caaaggacgaaattttaaatgattaatgattgcaag 1841806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 13914184 - 13914149
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  13914184 caaaggacgaaattttaaatgattaatgattgcaag 13914149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 26024704 - 26024739
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  26024704 caaaggacgaaattttaaatgattaatgattgcaag 26024739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 40210486 - 40210451
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  40210486 caaaggacgaaattttaaatgattaatgattgcaag 40210451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 46899917 - 46899948
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  46899917 gacgaaattttaaatgattaatgattgcaagg 46899948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 48779431 - 48779466
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  48779431 caaaggacgaaattttaaatgattaatgattgcaag 48779466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 17661967 - 17661933
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaa 64  Q
    |||| ||||||||||||||||||||||||||||||    
T  17661967 caaaggacgaaattttaaatgattaatgattgcaa 17661933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 19017739 - 19017710
Alignment:
Q  36 acgaaattttaaatgattaatgattgcaag 65  Q
    ||||||||||||||||||||||||||||||    
T  19017739 acgaaattttaaatgattaatgattgcaag 19017710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 46899172 - 46899143
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaa 64  Q
    ||||||||||||||||||||||||||||||    
T  46899172 gacgaaattttaaatgattaatgattgcaa 46899143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 183337 - 183301
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  183337 caaaggactaaattttaaatgattaatgattgcaagg 183301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 7821308 - 7821348
Alignment:
Q  59 ttgcaaggattagcaaatacaggacccatttttaaacgacc 99  Q
    |||||||||||||| |||||| |||| ||||||||||||||    
T  7821308 ttgcaaggattagcgaatacatgaccaatttttaaacgacc 7821348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 24009683 - 24009655
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  24009683 gaaattttaaatgattaatgattgcaagg 24009655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 32917580 - 32917608
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  32917580 gaaattttaaatgattaatgattgcaagg 32917608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 34464565 - 34464529
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||  |||||||||    
T  34464565 caaatgacgaaattttaaatgattaaacattgcaagg 34464529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 36694391 - 36694363
Alignment:
Q  37 cgaaattttaaatgattaatgattgcaag 65  Q
    |||||||||||||||||||||||||||||    
T  36694391 cgaaattttaaatgattaatgattgcaag 36694363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 36710492 - 36710464
Alignment:
Q  37 cgaaattttaaatgattaatgattgcaag 65  Q
    |||||||||||||||||||||||||||||    
T  36710492 cgaaattttaaatgattaatgattgcaag 36710464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 47999239 - 47999203
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  47999239 caaaggactaaattttaaatgattaatgattgcaagg 47999203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 1178159 - 1178090
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaatacaggacccatttttaaacgacc 99  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  1178159 caaaggacgaaattttaaatgattaataattgcaaggattagcgaatacatgaccaatttttaaacgacc 1178090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 53702124 - 53702189
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaatacaggacccatttttaaac 95  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||||| |||| ||||||||||    
T  53702124 caaatgacgaaattttaaatgattaatgattgcaagaattaacgaatacatgaccaatttttaaac 53702189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 16006127 - 16006188
Alignment:
Q  39 aaattttaaatgattaatgattgcaaggattagcaaatacag-gacccatttttaaacgacc 99  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||    
T  16006127 aaattttaaatgattaatgattggaaggattagcgaatacagagaccaatttttaaacgacc 16006188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 24711392 - 24711428
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  24711392 caaatgacgaaattttaaatgattaatgattgcaagg 24711428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 18831629 - 18831665
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||| |||||||||||||||||||||||||||||    
T  18831629 caaatgatgaaattttaaatgattaatgattgcaagg 18831665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 34765496 - 34765460
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  34765496 caaaggacgaaattttaaatgattaatgattgcaagg 34765460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 35028114 - 35028078
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  35028114 caaaagacgaaattttaaatgattaatgattgcaagg 35028078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 46661226 - 46661262
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  46661226 caaaggacgaaattttaaatgattaatgattgcaagg 46661262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 49879323 - 49879287
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  49879323 caaaggacgaaattttaaatgattaatgattgcaagg 49879287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 50418784 - 50418748
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  50418784 caaaggacgaaattttaaatgattaatgattgcaagg 50418748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 51692831 - 51692867
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  51692831 caaaggacgaaattttaaatgattaatgattgcaagg 51692867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 54713745 - 54713709
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  54713745 caaaggacgaaattttaaatgattaatgattgcaagg 54713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 10781801 - 10781832
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  10781801 gacgaaattttaaatgattaatgattgcaagg 10781832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 14802047 - 14802082
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  14802047 caaaggacgaaattttaaatgattaatgattgcaag 14802082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 17356041 - 17356006
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    ||||||||||||||||||||||||||||| ||||||    
T  17356041 caaatgacgaaattttaaatgattaatgaatgcaag 17356006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 24349785 - 24349754
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  24349785 gacgaaattttaaatgattaatgattgcaagg 24349754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 37976269 - 37976234
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  37976269 caaaggacgaaattttaaatgattaatgattgcaag 37976234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 148072 - 148102
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaag 65  Q
    |||||||||||||||||||||||||||||||    
T  148072 gacgaaattttaaatgattaatgattgcaag 148102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 22567089 - 22567131
Alignment:
Q  39 aaattttaaatgattaatgattgcaaggattagcaaatacagg 81  Q
    |||||||||||||||||  ||||||||||||||||| ||||||    
T  22567089 aaattttaaatgattaacaattgcaaggattagcaattacagg 22567131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 24350744 - 24350778
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaa 64  Q
    |||| ||||||||||||||||||||||||||||||    
T  24350744 caaaggacgaaattttaaatgattaatgattgcaa 24350778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 27934821 - 27934863
Alignment:
Q  39 aaattttaaatgattaatgattgcaaggattagcaaatacagg 81  Q
    |||||||||||||||||  ||||||||||||||||| ||||||    
T  27934821 aaattttaaatgattaacaattgcaaggattagcaattacagg 27934863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 8439541 - 8439574
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaaggat 68  Q
    ||||||||||||||||||||||| ||||||||||    
T  8439541 gacgaaattttaaatgattaatgtttgcaaggat 8439574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 53129616 - 53129587
Alignment:
Q  36 acgaaattttaaatgattaatgattgcaag 65  Q
    ||||||||||||||||||||||||||||||    
T  53129616 acgaaattttaaatgattaatgattgcaag 53129587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 1179120 - 1179148
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  1179120 gaaattttaaatgattaatgattgcaagg 1179148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 5369179 - 5369215
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  5369179 caaaggactaaattttaaatgattaatgattgcaagg 5369215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 7452115 - 7452151
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  7452115 caaaggactaaattttaaatgattaatgattgcaagg 7452151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 10780821 - 10780793
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  10780821 gaaattttaaatgattaatgattgcaagg 10780793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 10974430 - 10974402
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  10974430 gaaattttaaatgattaatgattgcaagg 10974402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 13058294 - 13058330
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  13058294 caaaggactaaattttaaatgattaatgattgcaagg 13058330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 36008960 - 36008924
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  36008960 caaaggactaaattttaaatgattaatgattgcaagg 36008924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 43155645 - 43155609
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  43155645 caaatgactaaattttaaatgattaacgattgcaagg 43155609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 44967185 - 44967149
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  44967185 caaaggactaaattttaaatgattaatgattgcaagg 44967149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 48528582 - 48528518
Alignment:
Q  36 acgaaattttaaatgattaatgattgcaaggattagcaaatacag-gacccatttttaaacgacc 99  Q
    ||||||||||||||||||||   |||||||||||  | ||||||| |||| ||||||||||||||    
T  48528582 acgaaattttaaatgattaaattttgcaaggattgacgaatacagagaccaatttttaaacgacc 48528518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 52909565 - 52909601
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  52909565 caaaggacgaaattttaaataattaatgattgcaagg 52909601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 40033622 - 40033554
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaataca-ggacccatttttaaacga 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||||||    
T  40033622 caaatgacgaaattttaaatgattaatgattgcaaggattagcgaatacatggatcaatttttaaacga 40033554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 51994067 - 51993997
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaataca-ggacccatttttaaacgacc 99  Q
    |||| ||| ||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  51994067 caaaggactaaattttaaatgattaatgattgtaaggattagcgaatacagggaccaatttttaaacgacc 51993997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 55052395 - 55052325
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaatacag-gacccatttttaaacgacc 99  Q
    |||| ||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  55052395 caaaggactaaattttaaatgattaatgattgcaaggattagcgaatacagagaccaatttttagacgacc 55052325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 35712147 - 35712082
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaataca-ggacccatttttaaa 94  Q
    |||| |||||||||||||||||||||  ||||||||||||||| |||||| ||||| |||||||||    
T  35712147 caaaagacgaaattttaaatgattaaacattgcaaggattagcgaatacatggaccaatttttaaa 35712082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 19741039 - 19741003
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  19741039 caaaggacgaaattttaaatgattaatgattgcaagg 19741003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 36417804 - 36417768
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  36417804 caaaggacgaaattttaaatgattaatgattgcaagg 36417768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 36418000 - 36418036
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  36418000 caaaggacgaaattttaaatgattaatgattgcaagg 36418036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 46475093 - 46475129
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  46475093 caaaggacgaaattttaaatgattaatgattgcaagg 46475129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 26463748 - 26463713
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  26463748 caaaggacgaaattttaaatgattaatgattgcaag 26463713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 40758422 - 40758457
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  40758422 caaaggacgaaattttaaatgattaatgattgcaag 40758457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 53757040 - 53757071
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  53757040 gacgaaattttaaatgattaatgattgcaagg 53757071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 41558199 - 41558229
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaag 65  Q
    |||||||||||||||||||||||||||||||    
T  41558199 gacgaaattttaaatgattaatgattgcaag 41558229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 3849142 - 3849114
Alignment:
Q  35 gacgaaattttaaatgattaatgattgca 63  Q
    |||||||||||||||||||||||||||||    
T  3849142 gacgaaattttaaatgattaatgattgca 3849114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 23458095 - 23458059
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||||||||| |||||||||    
T  23458095 caaaggacgaaattttaaatgattaattattgcaagg 23458059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 33689497 - 33689461
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  33689497 caaaggacaaaattttaaatgattaatgattgcaagg 33689461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 41558120 - 41558088
Alignment:
Q  34 tgacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||| |||||||||    
T  41558120 tgacgaaattttaaatgattaataattgcaagg 41558088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 43384595 - 43384631
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  43384595 caaaggacgaaattttaaatgactaatgattgcaagg 43384631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 12199236 - 12199300
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaaggattagcaaatac-aggacccatttttaaacgac 98  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||    
T  12199236 gacgaaattttaaatgattaatgattgcaaggattagcgattacaaggaccaatttttaaacgac 12199300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 12443664 - 12443728
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaaggattagcaaatac-aggacccatttttaaacgac 98  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||||||||    
T  12443664 gacgaaattttaaatgattaatgattgcaaggattagcgattacaaggaccaatttttaaacgac 12443728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 31608629 - 31608562
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaatacaggacccatttttaaacga 97  Q
    |||||||||||||||||||| |||||||| ||||||||||||| |||||| || | ||||||||||||    
T  31608629 caaatgacgaaattttaaattattaatgaatgcaaggattagcgaatacatgatcaatttttaaacga 31608562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 13186371 - 13186407
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  13186371 caaatgacgaaattttaaatgattaatgattgcaagg 13186407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 30712071 - 30712108
Alignment:
Q  59 ttgcaaggattagcaaatacaggacccatttttaaacg 96  Q
    |||||||||||||||||||||||||| |||||||||||    
T  30712071 ttgcaaggattagcaaatacaggaccaatttttaaacg 30712108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 30719848 - 30719885
Alignment:
Q  59 ttgcaaggattagcaaatacaggacccatttttaaacg 96  Q
    |||||||||||||||||||||||||| |||||||||||    
T  30719848 ttgcaaggattagcaaatacaggaccaatttttaaacg 30719885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 4405778 - 4405738
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggatta 70  Q
    ||||||||||||||| |||| ||||||||||||||||||||    
T  4405778 caaatgacgaaatttaaaataattaatgattgcaaggatta 4405738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 8316769 - 8316733
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8316769 caaaggacgaaattttaaatgattaatgattgcaagg 8316733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 34685570 - 34685606
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||| ||||    
T  34685570 caaatgacgaaattttaaatgattaatgattgtaagg 34685606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 36928788 - 36928824
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  36928788 caaaggacgaaattttaaatgattaatgattgcaagg 36928824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 38862875 - 38862911
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38862875 caaaggacgaaattttaaatgattaatgattgcaagg 38862911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 39071954 - 39071990
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39071954 caaaggacgaaattttaaatgattaatgattgcaagg 39071990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 40318080 - 40318044
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||| |||||||||||||||||||||||||||    
T  40318080 caaatgacgcaattttaaatgattaatgattgcaagg 40318044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 12199066 - 12199031
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  12199066 caaaggacgaaattttaaatgattaatgattgcaag 12199031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 12443494 - 12443459
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  12443494 caaaggacgaaattttaaatgattaatgattgcaag 12443459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 30710966 - 30710935
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  30710966 gacgaaattttaaatgattaatgattgcaagg 30710935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 30712034 - 30712065
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  30712034 gacgaaattttaaatgattaatgattgcaagg 30712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 30719811 - 30719842
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  30719811 gacgaaattttaaatgattaatgattgcaagg 30719842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 35756894 - 35756929
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  35756894 caaaggacgaaattttaaatgattaatgattgcaag 35756929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 20385679 - 20385649
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaag 65  Q
    |||||||||||||||||||||||||||||||    
T  20385679 gacgaaattttaaatgattaatgattgcaag 20385649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 1425169 - 1425133
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  1425169 caaaggactaaattttaaatgattaatgattgcaagg 1425133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 4994773 - 4994737
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  4994773 caaaagacgaaattttaaataattaatgattgcaagg 4994737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 12273034 - 12272998
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12273034 caaaggacgaaattttaaatgattaataattgcaagg 12272998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 22915505 - 22915469
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  22915505 caaaagacgaaattgtaaatgattaatgattgcaagg 22915469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 23663661 - 23663625
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||||||||||||| |||||    
T  23663661 caaaggacgaaattttaaatgattaatgatttcaagg 23663625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 23698425 - 23698389
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  23698425 caaaggacgaaattttaactgattaatgattgcaagg 23698389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 38955984 - 38956020
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  38955984 caaaggactaaattttaaatgattaatgattgcaagg 38956020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 37657162 - 37657230
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaaggattagcaaataca-ggacccatttttaaacga 97  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||| ||| | ||||||||||||    
T  37657162 caaaggacgaaattttaaatgattaatgattgcaaggattaacgaatacagggatcaatttttaaacga 37657230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 3914450 - 3914486
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3914450 caaatgatgaaattttaaatgattaatgattgcaagg 3914486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 10936106 - 10936142
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10936106 caaaggacgaaattttaaatgattaatgattgcaagg 10936142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 17885744 - 17885708
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  17885744 caaaggacgaaattttaaatgattaatgattgcaagg 17885708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 28469126 - 28469090
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28469126 caaaggacgaaattttaaatgattaatgattgcaagg 28469090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 48788919 - 48788883
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48788919 caaatgatgaaattttaaatgattaatgattgcaagg 48788883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 2640294 - 2640259
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  2640294 caaaggacgaaattttaaatgattaatgattgcaag 2640259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 27396745 - 27396710
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    ||||||| ||||||||||||||||||||||||||||    
T  27396745 caaatgatgaaattttaaatgattaatgattgcaag 27396710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 40380001 - 40380032
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  40380001 gacgaaattttaaatgattaatgattgcaagg 40380032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 47945469 - 47945439
Alignment:
Q  34 tgacgaaattttaaatgattaatgattgcaa 64  Q
    |||||||||||||||||||||||||||||||    
T  47945469 tgacgaaattttaaatgattaatgattgcaa 47945439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 47950899 - 47950869
Alignment:
Q  34 tgacgaaattttaaatgattaatgattgcaa 64  Q
    |||||||||||||||||||||||||||||||    
T  47950899 tgacgaaattttaaatgattaatgattgcaa 47950869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 6571260 - 6571296
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||||||||| |||||||||    
T  6571260 caaaggacgaaattttaaatgattaataattgcaagg 6571296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 17102301 - 17102337
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  17102301 caaaggactaaattttaaatgattaatgattgcaagg 17102337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 27992020 - 27992056
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  27992020 caaaggactaaattttaaatgattaatgattgcaagg 27992056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 32053251 - 32053223
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  32053251 gaaattttaaatgattaatgattgcaagg 32053223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 2462 - 2522
Alignment:
Q  37 cgaaattttaaatgattaatgattgcaaggattagcaaatacaggacccatttttaaacga 97  Q
    |||||||||||||||||||| |||||||||||||| ||||||  |||| ||||| ||||||    
T  2462 cgaaattttaaatgattaataattgcaaggattagtaaatacgagaccaattttaaaacga 2522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 18670478 - 18670543
Alignment:
Q  31 aaatgacgaaattttaaatgattaatgattgcaaggattagcaaatacag-gacccatttttaaacga 97  Q
    ||||||||||||||||||||||||||  ||||||||||| || ||||||| |||| ||||||||||||    
T  18670478 aaatgacgaaattttaaatgattaat--ttgcaaggattggcgaatacagagaccaatttttaaacga 18670543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 24547306 - 24547270
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  24547306 caaatgacgaaattttaaatgattaatgattgcaagg 24547270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 27937169 - 27937133
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  27937169 caaatgacgaaattttaaatgattaatgattgcaagg 27937133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 35512426 - 35512462
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  35512426 caaatgacgaaattttaaatgattaatgattgcaagg 35512462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 38475149 - 38475113
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  38475149 caaatgacgaaattttaaatgattaatgattgcaagg 38475113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 17202711 - 17202746
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  17202711 caaatgacgaaattttaaatgattaatgattgcaag 17202746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 186731 - 186767
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  186731 caaaggacgaaattttaaatgattaatgattgcaagg 186767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 6150732 - 6150768
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6150732 caaaggacgaaattttaaatgattaatgattgcaagg 6150768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 8322716 - 8322752
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8322716 caaaggacgaaattttaaatgattaatgattgcaagg 8322752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 11047749 - 11047785
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11047749 caaaggacgaaattttaaatgattaatgattgcaagg 11047785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 28269538 - 28269502
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28269538 caaaggacgaaattttaaatgattaatgattgcaagg 28269502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 35920344 - 35920308
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  35920344 caaaggacgaaattttaaatgattaatgattgcaagg 35920308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 39453611 - 39453647
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39453611 caaaggacgaaattttaaatgattaatgattgcaagg 39453647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 43159126 - 43159162
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  43159126 caaaggacgaaattttaaatgattaatgattgcaagg 43159162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 5994201 - 5994236
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  5994201 caaaggacgaaattttaaatgattaatgattgcaag 5994236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 6301855 - 6301890
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  6301855 caaaggacgaaattttaaatgattaatgattgcaag 6301890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 10684250 - 10684285
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||||||||||| |||||||||||||||||||||||    
T  10684250 caaatgacgaaactttaaatgattaatgattgcaag 10684285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 13362338 - 13362307
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  13362338 gacgaaattttaaatgattaatgattgcaagg 13362307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 14194539 - 14194504
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  14194539 caaaggacgaaattttaaatgattaatgattgcaag 14194504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 16083255 - 16083290
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16083255 caaataacgaaattttaaatgattaatgattgcaag 16083290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 16156971 - 16156936
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  16156971 caaaggacgaaattttaaatgattaatgattgcaag 16156936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 3528947 - 3528906
Alignment:
Q  59 ttgcaaggattagcaaataca-ggacccatttttaaacgacc 99  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  3528947 ttgcaaggattagcaaatacagggaccaatttttaaacgacc 3528906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 13963147 - 13963176
Alignment:
Q  36 acgaaattttaaatgattaatgattgcaag 65  Q
    ||||||||||||||||||||||||||||||    
T  13963147 acgaaattttaaatgattaatgattgcaag 13963176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 20814246 - 20814217
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaa 64  Q
    ||||||||||||||||||||||||||||||    
T  20814246 gacgaaattttaaatgattaatgattgcaa 20814217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 21265217 - 21265176
Alignment:
Q  59 ttgcaaggattagcaaataca-ggacccatttttaaacgacc 99  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  21265217 ttgcaaggattagcaaatacatggaccaatttttaaacgacc 21265176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5255133 - 5255097
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||| | |||||||    
T  5255133 caaatgacgaaattttaaatgattaataaatgcaagg 5255097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 6301617 - 6301573
Alignment:
Q  59 ttgcaaggattagcaaataca-ggacccatttttaaacgaccata 102  Q
    |||||||||||||| |||||| ||||| |||||||||||||||||    
T  6301617 ttgcaaggattagcgaatacaaggaccaatttttaaacgaccata 6301573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 11762029 - 11762065
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  11762029 caaaggactaaattttaaatgattaatgattgcaagg 11762065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 19517919 - 19517955
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  19517919 caaaagacaaaattttaaatgattaatgattgcaagg 19517955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 19892424 - 19892388
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||||||||||||| |||||    
T  19892424 caaaggacgaaattttaaatgattaatgattacaagg 19892388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 20814209 - 20814169
Alignment:
Q  59 ttgcaaggattagcaaatacaggacccatttttaaacgacc 99  Q
    |||||||||||||| |||||| |||| ||||||||||||||    
T  20814209 ttgcaaggattagcgaatacaagaccaatttttaaacgacc 20814169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 21265259 - 21265223
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  21265259 caaaggacgaaattttaaataattaatgattgcaagg 21265223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 27587427 - 27587463
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  27587427 caaaggactaaattttaaatgattaatgattgcaagg 27587463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 32242554 - 32242590
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  32242554 caaaggacaaaattttaaatgattaatgattgcaagg 32242590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 38442379 - 38442415
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||| |||||||||||||||    
T  38442379 caaaggacgaaattttaaatggttaatgattgcaagg 38442415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 9076380 - 9076414
Alignment:
Q  31 aaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||||||||||||||||||||||||||||||||||    
T  9076380 aaatgacgaaattttaaatgattaatgattgcaag 9076414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 13692532 - 13692568
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  13692532 caaaggacgaaattttaaatgattaatgattgcaagg 13692568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 15848400 - 15848436
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  15848400 caaaggacgaaattttaaatgattaatgattgcaagg 15848436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 36755400 - 36755436
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  36755400 caaaggacgaaattttaaatgattaatgattgcaagg 36755436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 44713911 - 44713875
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  44713911 caaaggacgaaattttaaatgattaatgattgcaagg 44713875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 34448107 - 34448142
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  34448107 caaaggacgaaattttaaatgattaatgattgcaag 34448142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 14900590 - 14900548
Alignment:
Q  39 aaattttaaatgattaatgattgcaaggattagcaaatacagg 81  Q
    |||||||||||||||||  ||||||||||||||||| ||||||    
T  14900590 aaattttaaatgattaacaattgcaaggattagcaattacagg 14900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 16099336 - 16099372
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  16099336 caaaggactaaattttaaatgattaatgattgcaagg 16099372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 36480030 - 36480066
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  36480030 caaaggacgaaattttaaattattaatgattgcaagg 36480066  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 37895455 - 37895427
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  37895455 gaaattttaaatgattaatgattgcaagg 37895427  T

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Target: scaffold0707 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 6391 - 6427
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6391 caaaggacgaaattttaaatgattaatgattgcaagg 6427  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 2059 - 2091
Alignment:
Q  36 acgaaattttaaatgattaatgattgcaaggat 68  Q
    |||||||||||||||||||||||||||||||||    
T  2059 acgaaattttaaatgattaatgattgcaaggat 2091  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 11434918 - 11434882
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  11434918 caaaggacgaaattttaaatgattaatgattgcaagg 11434882  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 17734312 - 17734276
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  17734312 caaaggacgaaattttaaatgattaatgattgcaagg 17734276  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 21627829 - 21627793
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21627829 caaaggacgaaattttaaatgattaatgattgcaagg 21627793  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 30337730 - 30337766
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  30337730 caaaggacgaaattttaaatgattaatgattgcaagg 30337766  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 33517846 - 33517882
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  33517846 caaaggacgaaattttaaatgattaatgattgcaagg 33517882  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 679977 - 679946
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  679977 gacgaaattttaaatgattaatgattgcaagg 679946  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 681045 - 681076
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  681045 gacgaaattttaaatgattaatgattgcaagg 681076  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 11393116 - 11393151
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    ||||||||||||||| ||||||||||||||||||||    
T  11393116 caaatgacgaaatttgaaatgattaatgattgcaag 11393151  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 11435986 - 11436049
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaaggattagcaaataca-ggacccatttttaaacga 97  Q
    ||||||||||||||||||||||  ||||||| |||||| |||||| | ||| ||||||||||||    
T  11435986 gacgaaattttaaatgattaatatttgcaagaattagcgaatacatgaaccaatttttaaacga 11436049  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 12080948 - 12080983
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  12080948 caaaggacgaaattttaaatgattaatgattgcaag 12080983  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 13379799 - 13379830
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  13379799 gacgaaattttaaatgattaatgattgcaagg 13379830  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 20651121 - 20651090
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  20651121 gacgaaattttaaatgattaatgattgcaagg 20651090  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 30804173 - 30804207
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaa 64  Q
    |||| ||||||||||||||||||||||||||||||    
T  30804173 caaaggacgaaattttaaatgattaatgattgcaa 30804207  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 3059576 - 3059604
Alignment:
Q  38 gaaattttaaatgattaatgattgcaagg 66  Q
    |||||||||||||||||||||||||||||    
T  3059576 gaaattttaaatgattaatgattgcaagg 3059604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 30726071 - 30726107
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||||||||||||| |||||    
T  30726071 caaaggacgaaattttaaatgattaatgatttcaagg 30726107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 33647263 - 33647299
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  33647263 caaaggactaaattttaaatgattaatgattgcaagg 33647299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 69282 - 69313
Alignment:
Q  35 gacgaaattttaaatgattaatgattgcaagg 66  Q
    ||||||||||||||||||||||||||||||||    
T  69282 gacgaaattttaaatgattaatgattgcaagg 69313  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 37680 - 37645
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaag 65  Q
    |||| |||||||||||||||||||||||||||||||    
T  37680 caaaggacgaaattttaaatgattaatgattgcaag 37645  T

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Target: scaffold0775 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5078 - 5042
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| |||||||||||||||||||||| |||||||||    
T  5078 caaaggacgaaattttaaatgattaataattgcaagg 5042  T

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Target: scaffold0075 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 14545 - 14509
Alignment:
Q  30 caaatgacgaaattttaaatgattaatgattgcaagg 66  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  14545 caaaagacaaaattttaaatgattaatgattgcaagg 14509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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