View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_187 (Length: 251)
Name: NF1126_low_187
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_187 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 34596564 - 34596324
Alignment:
| Q |
11 |
cagagacctttggcacgaagaagattctccatcaactcactccaatgatcatagtgaagaccatcaaaatggggaatttttgctgaaagctttgtgtcac |
110 |
Q |
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| T |
34596564 |
cagagacctttggcacgaagaagattctccatcaactcactccaatgatcatagtgaagaccatcaaaatgaggaatttttgctgaaagctttgtgtcac |
34596465 |
T |
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| Q |
111 |
tcatttttgtgtttctctctttttcttagctaagctgcggcttagatatttttatcaggcccagtgggggctctgataccagtttgtagagatatggaat |
210 |
Q |
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| T |
34596464 |
tcatttttgtgtttctctctttttcttagctaagctacggcttagttatttttatcaggcccagtgggggctctgataccagtttgtagagatatggaat |
34596365 |
T |
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| Q |
211 |
atgaaactcaaaactgcagctttattgattaaacatagact |
251 |
Q |
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| T |
34596364 |
atgaaactcaaaactgctgctttattgataaaatatagact |
34596324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 34600659 - 34600601
Alignment:
| Q |
193 |
tttgtagagatatggaatatgaaactcaaaactgcagctttattgattaaacatagact |
251 |
Q |
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| T |
34600659 |
tttgtagagatatggaatataaaactcaaaactgctgctttattgataaaatatagact |
34600601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 1185390 - 1185193
Alignment:
| Q |
14 |
agacctttggcacgaagaagattctccatcaactcactccaatgatcatagtgaagaccatcaaaatggggaatttttgctgaaagctttgtgtcactca |
113 |
Q |
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| T |
1185390 |
agacctttggcacgaagaagattctccatcaactcattccaatgatcgtagtggagaccatcaaaatgaggaatttttgctaaaaactttgtgtcactca |
1185291 |
T |
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| Q |
114 |
tttttgtgtttctctctttttcttagctaagctgcggcttagatatttttatcaggcccagtgggggctctgataccagtttgtagagatatggaatat |
212 |
Q |
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| T |
1185290 |
tttttgtgtttctctctgtttcttagctaagctacggcttagtta-ttttatcaggccctatgggggctctgatactagtttgtagagatatagaatat |
1185193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 37557510 - 37557482
Alignment:
| Q |
163 |
tatcaggcccagtgggggctctgatacca |
191 |
Q |
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| T |
37557510 |
tatcaggcccagtgggggctctgatacca |
37557482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 21469687 - 21469715
Alignment:
| Q |
163 |
tatcaggcccagtgggggctctgatacca |
191 |
Q |
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| T |
21469687 |
tatcaggcccagtgggggctctgatacca |
21469715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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