View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1126_low_192 (Length: 251)

Name: NF1126_low_192

Description: NF1126

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1126_low_192

[»] chr7 (6 HSPs)

Alignment Details

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 189; E-Value: 1e-102

Query Start/End: Original strand, 30 - 251

Target Start/End: Complemental strand, 35789643 - 35789422

Alignment:

Q	30	gcaacattgaagaaaaaggcgaggaagtcgtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacaaagaagacga	129	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	35789643	gcaacattgaagaaaaaggcgaggaagtcgtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacgaagaagacga	35789544	T

Q	130	aaagttaacaaagccttatgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaataaccnnnnnnncttttggaaacagtatgatgct	229	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35789543	aaagttaacaaagccttatgaaccaaatgatgttgctcggggatgggaatcgaaccaacatggaaataaccaaaaaaacttttggaaacagtatgatgct	35789444	T

Q	230	tccattgaacatgctgcaaaag	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35789443	cccattgaacatgctgcaaaag	35789422	T

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Target: chr7; HSP #2

Raw Score: 64; E-Value: 4e-28

Query Start/End: Original strand, 107 - 198

Target Start/End: Complemental strand, 35799194 - 35799103

Alignment:

Q	107	ggatggggggacaaagaagacgaaaagttaacaaagccttatgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaataa	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	35799194	ggatggggggacgaagaagacgaaaagttaacaaagccttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaataa	35799103	T

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Target: chr7; HSP #3

Raw Score: 56; E-Value: 3e-23

Query Start/End: Original strand, 49 - 178

Target Start/End: Complemental strand, 35785772 - 35785646

Alignment:

Q	49	cgaggaagtcgtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacaaagaagacgaaaagttaacaaagccttat	148	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|
T	35785772	cgaggaaatcgtgattctcggtagttctctcctcttgaatcagtccttgtctggtcctggatggggggacaaagaa---gaaaacgtaacaaagccctct	35785676	T

Q	149	gaaccaaatgatgttgctctgggatgggaa	178	Q
		\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	35785675	gaaccaaactatgctgctcagggatgggaa	35785646	T

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Target: chr7; HSP #4

Raw Score: 48; E-Value: 2e-18

Query Start/End: Original strand, 30 - 198

Target Start/End: Complemental strand, 35755695 - 35755524

Alignment:

Q	30	gcaacattgaagaaaaaggcgaggaagtcgtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacaaagaagacga	129	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\| \|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|
T	35755695	gcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatggggggacgaagaagaaaa	35755596	T

Q	130	a----aagttaacaaagccttatgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaataa	198	Q
		\| \|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|
T	35755595	agaagaagtt-agaaagccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataa	35755524	T

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Target: chr7; HSP #5

Raw Score: 44; E-Value: 4e-16

Query Start/End: Original strand, 107 - 198

Target Start/End: Complemental strand, 35760761 - 35760670

Alignment:

Q	107	ggatggggggacaaagaagacgaaaagttaacaaagccttatgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaataa	198	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	35760761	ggatggggggacgaagaagaaaaagaagtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaataa	35760670	T

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Target: chr7; HSP #6

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 32 - 105

Target Start/End: Complemental strand, 35760851 - 35760778

Alignment:

Q	32	aacattgaagaaaaaggcgaggaagtcgtgattctcagtagttctctcttcttggatcagtccttatcgggtcc	105	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	35760851	aacatggaagaaaaaggcgaggcagctgtgattcttggtagttctcttctcttgaatcagtccttttccggtcc	35760778	T

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