View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_195 (Length: 251)
Name: NF1126_low_195
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_195 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 7740238 - 7740481
Alignment:
| Q |
1 |
taaaataacgaggtttttattgaaaaattgggtcacctacgttattgctaagtttgtagactttgtataaactatttaatctaattttatatacgatctc |
100 |
Q |
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| T |
7740238 |
taaaataacgaggtttttattgaaaaattgggtcacctacgttgttgctaagttcgtagactttgtataaactatttaatctaattttatatacgatctc |
7740337 |
T |
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| Q |
101 |
tccataactttcatactgtatatgaaatatttaannnnnnnagtgaaagaaaatacggaattgaaaaacggtaaatgtatttctagttttataaaattta |
200 |
Q |
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| T |
7740338 |
tccataattttcatactgtatatgaaatatttaattttttgactcaaagaaaatacgggattgaaaaacggtaaatgtatttctagttttataaaattta |
7740437 |
T |
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| Q |
201 |
aaattaatattttggtatgcttctccttttcaacacctttgttt |
244 |
Q |
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| T |
7740438 |
aaattaatattttggtatgcttctccttttcaacacctttgttt |
7740481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 7732129 - 7732205
Alignment:
| Q |
39 |
acgttattgctaagtttgtagactttgtataaactatttaatctaattttatatacgatctctccataactttcata |
115 |
Q |
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| T |
7732129 |
acgttgtttctaagttcatagactttgtataaactatctaatctaattttatatacgatctctccataattttcata |
7732205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 7732344 - 7732426
Alignment:
| Q |
163 |
gaaaaacggtaaatgtatttctagttttataaaattt-aaaattaatattttggtatgcttctccttttcaacacctttgttt |
244 |
Q |
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| T |
7732344 |
gaaaaatggtaaatgtatttttagtttgataaaattttaaaattaatattttggtatgctcctcctttctaacacccttgttt |
7732426 |
T |
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