View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_197 (Length: 251)
Name: NF1126_low_197
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_197 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 27834900 - 27834661
Alignment:
| Q |
1 |
ttgtcattttgatcttctgtattttaactattttgagagatcgtgttgtgttgtagattgctgcagggttgtgtgacaatcttttgacagcaagggacta |
100 |
Q |
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| T |
27834900 |
ttgtcattttgatcttctgtattttaagtattttgagagatgatgttgtgctgtagattgctgcagggttgtgtgacaatcttttgacagcaagggacta |
27834801 |
T |
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| Q |
101 |
cgagaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcacgagtcgaagattgaagttaaaaagcctattaaattgcaaa |
200 |
Q |
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| T |
27834800 |
cgagaagccggtgtttgttgcaccatcaatca---atgctatgtggagaaatcctttcacgagtcgaagattgaagttaaaaagcctattaaattgcaaa |
27834704 |
T |
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| Q |
201 |
ttgacaacaagtttgcagtaaatttagccaaaaaccctatgctac |
245 |
Q |
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| T |
27834703 |
ttgaca--aagtttgcagtaaatttagccaaaaaccctatgctac |
27834661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 28580404 - 28580255
Alignment:
| Q |
24 |
ttaactattttgagagatcgtgtt-gtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccg |
110 |
Q |
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| T |
28580404 |
ttaactattttgagacatggtgtttgtgttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaagccg |
28580305 |
T |
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| Q |
111 |
gtgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac |
160 |
Q |
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| T |
28580304 |
atgtttgttgcaccgtcaatgaatgatgccatgtggagaaatcctttcac |
28580255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 28404396 - 28404544
Alignment:
| Q |
24 |
ttaactattttgagagatcgtgttgtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccgg |
111 |
Q |
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| T |
28404396 |
ttaactgttttgaggaatggtgttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccga |
28404495 |
T |
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| Q |
112 |
tgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac |
160 |
Q |
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| T |
28404496 |
tgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcac |
28404544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 28585403 - 28585255
Alignment:
| Q |
24 |
ttaactattttgagagatcgtgttgtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccgg |
111 |
Q |
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| T |
28585403 |
ttaactgttttgaggaatggtgttgtgttgtagatttctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccga |
28585304 |
T |
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| Q |
112 |
tgtttgttgcaccatcaatcaacgatgctatgtggagaaatcctttcac |
160 |
Q |
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| T |
28585303 |
tgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcac |
28585255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 28417853 - 28417979
Alignment:
| Q |
46 |
ttgtgttgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccggtgtttgttgcaccatcaatcaa |
133 |
Q |
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| T |
28417853 |
ttgtgttgtagattgctggagggttgtgtgacaatctattgacaagcattgtgagagcatgggactacgagaagccgatgttcgttgcaccatcaatgga |
28417952 |
T |
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| Q |
134 |
cgatgctatgtggagaaatcctttcac |
160 |
Q |
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| T |
28417953 |
tggttgtatgtggagaaaccctttcac |
28417979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 28420317 - 28420371
Alignment:
| Q |
103 |
agaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatccttt |
157 |
Q |
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| T |
28420317 |
agaagccaatgtttgtagcaccatcaatgaatgatgcaatgtggagaaatccttt |
28420371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 28581873 - 28581819
Alignment:
| Q |
103 |
agaagccggtgtttgttgcaccatcaatcaacgatgctatgtggagaaatccttt |
157 |
Q |
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| T |
28581873 |
agaagccaatgtttgtagcaccatcaatgaatgatgcaatgtggagaaatccttt |
28581819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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