View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1126_low_2 (Length: 879)
Name: NF1126_low_2
Description: NF1126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1126_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 16 - 782
Target Start/End: Complemental strand, 38881364 - 38880598
Alignment:
| Q |
16 |
atggaagatggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38881364 |
atggaagatggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaacgtgtaagaaacatgcctac |
38881265 |
T |
|
| Q |
116 |
acaaaaatatgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttg |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38881264 |
acaaaaatatgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttg |
38881165 |
T |
|
| Q |
216 |
agcacttacaagactcaatatctttgtcactgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagcttgtggc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38881164 |
agcacttacaagactcaatatctttgtcagtgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagctagtggc |
38881065 |
T |
|
| Q |
316 |
attgagctcttctttcaaatttgtttcctctttactctttttggaagttaactctcttttatcttattgagattttccttggctattttatgataactac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
38881064 |
attgagctcttctttcaaatttgtttcctctttactctttttggaagttaactctcttttattttattgagtttttccttggctattttatgataactac |
38880965 |
T |
|
| Q |
416 |
tttctttgtgattaannnnnnnccttgagcaccttttccttttattgcaaggaatataagcatgtcagtgtctatcattgatcttgtataagtactaata |
515 |
Q |
| |
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|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38880964 |
tttctttgtggttaaattttttcctttagcaccttttccttttattgcaaggaatataagcatgttagtgtctatcattgatcttgtataagtactaata |
38880865 |
T |
|
| Q |
516 |
attgaattccttttatagttaaaaacttctaattctttatgtttataacttttatgaagctgttcaatattctgacatgatctatcatttgtttaaatgt |
615 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38880864 |
attgaactccttttatagttaaaaacttctaattctttatgtttataacttttatgaagctgttcaatattctgacatgatctatcatttgtttaaatgt |
38880765 |
T |
|
| Q |
616 |
aatataattggtgcagcgcgaacagaataatgaagggtggtggtgcttccaataaaaaatatactttacctgagcttgttcaaattgttgaaagatatga |
715 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38880764 |
aatataattggtgcagcgcgaacagaataatgaagagtggtggtgcttccaataaaaaatatactttacctgagcttgttcaaattgttgaaagatatga |
38880665 |
T |
|
| Q |
716 |
ggagaaagtgaatgcttctgctaaaactgaggtatccttcttgtacttctttggattaggaactttg |
782 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38880664 |
ggagaaagcgaatgcttctgctaaaactgaggtatccttcttgtacttctttggattaggaactttg |
38880598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 535 - 632
Target Start/End: Complemental strand, 16632378 - 16632280
Alignment:
| Q |
535 |
taaaaacttctaattctttatgtttataac-ttttatgaagctgttcaatattctgacatgatctatcatttgtttaaatgtaatataattggtgcagc |
632 |
Q |
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||||||||| ||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| | |||||| |
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| T |
16632378 |
taaaaactttgaattctttatgtttacaacattttctgaagctcttcaatattctgacatgatctaccatctgtttaaatgtaatataatcgatgcagc |
16632280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 14630989 - 14630860
Alignment:
| Q |
27 |
taagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatg |
126 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||| |||||| ||||||||| |||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
14630989 |
taagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactacacaaaaatatg |
14630890 |
T |
|
| Q |
127 |
atttgaattgtgcattttcttttagtttat |
156 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| |
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|
| T |
14630889 |
atttgaattgcacattctcttttaatttat |
14630860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 14630823 - 14630748
Alignment:
| Q |
156 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||| ||| |||| |
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|
| T |
14630823 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactc |
14630748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 15621125 - 15621208
Alignment:
| Q |
157 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
240 |
Q |
| |
|
|||||||| | |||||||||||||||| |||| ||| |||||||||||||||||| | ||||| |||||| |||||||||||| |
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| T |
15621125 |
gtgtaacaaaatgtgttaagcataagttcaaacgttaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15621208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 598
Target Start/End: Complemental strand, 16620003 - 16619938
Alignment:
| Q |
533 |
gttaaaaacttctaattctttatgtttataacttttatgaagctgttcaatattctgacatgatct |
598 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| ||| || |||||||||||||||| |||| |
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|
| T |
16620003 |
gttaaaaacttttaattctttatgtttatagcttttaggaacctcttcaatattctgacattatct |
16619938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 557 - 632
Target Start/End: Complemental strand, 14630536 - 14630460
Alignment:
| Q |
557 |
tttataac-ttttatgaagctgttcaatattctgacatgatctatcatttgtttaaatgtaatataattggtgcagc |
632 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||||| |
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|
| T |
14630536 |
tttataacattttctgaagctcttcaatattctgacatgatctaccatctgtgtaaatgtaatatatttgatgcagc |
14630460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 15644894 - 15644977
Alignment:
| Q |
157 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
240 |
Q |
| |
|
|||||||| | |||||||||||||| | |||| || |||||||||||||||||| | ||||| |||||| |||||||||||| |
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|
| T |
15644894 |
gtgtaacaaaatgtgttaagcataaattcaaacattaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15644977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 16641417 - 16641374
Alignment:
| Q |
156 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
16641417 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatct |
16641374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 16641562 - 16641475
Alignment:
| Q |
49 |
accgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatgatttgaattg |
136 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || ||||| ||| ||||||||||||||||||| ||||||| ||||| ||||| |
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|
| T |
16641562 |
accgagagatggaaaatcaaagagaaccggaaaaagactgtgaagaaaatgtaagaaacatgcctacagaaaaatacgatttaaattg |
16641475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 713 - 751
Target Start/End: Complemental strand, 16619832 - 16619794
Alignment:
| Q |
713 |
tgaggagaaagtgaatgcttctgctaaaactgaggtatc |
751 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
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|
| T |
16619832 |
tgaggagaaagtgaatgcttctgccaaaactgaggtatc |
16619794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 623
Target Start/End: Complemental strand, 16641238 - 16641193
Alignment:
| Q |
578 |
ttcaatattctgacatgatctatcatttgtttaaatgtaatataat |
623 |
Q |
| |
|
|||| ||||||||| ||||||| ||| ||||||||||||||||||| |
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|
| T |
16641238 |
ttcactattctgacttgatctaccatctgtttaaatgtaatataat |
16641193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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